Hg_chrom3_TN10mRNA_6031
Organism: Heterodera glycines Gene Locus: chr3:8559652-8561077 Feature type: polypeptideProtein Sequence
Length: 246
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.473 | 0.756 | 1.109 | 1.121 | 1.084 | 2.502 | 0.871 | 1.423 | 0.632 | 0.934 | 0.37 | 2.152 | 1.468 | 1.094 | 1.078 | 0.987 | 0.666 | 1.17 | 0.938 | 1.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5724
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.792
|
0.167
|
0.012
|
0.429
|
0.168
|
0.255
|
0.168
|
0.010
|
0.100
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008003
|
1.000
|
1.000
|
Hsc_gene_167.t1
|
Hsc_gene_167.t1
|
— |
Q91398.1 Casein kinase II subunit beta [Danio rerio]
|
KAI3420229.1 Casein kinase II subunit beta [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005956|GO:0019887
|
GO:0005575_0.832|GO:0110165_0.816|GO:0005622_0.742|GO:0008150_0.720|GO:0003674_0.693|GO:0016020_0.666|GO:0043226_0.639|GO:0005488_0.621|GO:0043229_0.617|GO:0043227_0.611|GO:0043231_0.586|GO:0065007_0.580|GO:0050789_0.576|GO:0005634_0.557|GO:0005515_0.531|GO:0009987_0.516|GO:0005737_0.507
|
IPR000704+1-204_8-24_8-189_25-39_78-99_103-124_107-138_125-146_153-170+|IPR016149+1-103+|IPR035991+6-200+
|
SM01085+8-189+
|
PF01214+8-189+Casein_kinase_II_regulatory_subunit
|
G3DSA:1.10.1820.10:FF:000001+1-103+Casein_kinase_II_subunit_beta|G3DSA:2.20.25.20:FF:000002+104-178+Casein_kinase_II_subunit_beta
|
PTHR11740+1-204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
206-246
|
1.000
|
1-205
|
4md9_O
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
28181.600
|
4.722
|
-8.500
|
23.171
|
14.228
|
47.154
|
52.846
|
10.569
|
12.602
|
48.374
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1471.984
|
2301.177
|
1944.650
|
1731.756
|
1817.644
|
1650.978
|
1992.025
|
1802.376
|
1105.790
|
645.359
|
842.687
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.472
|
-0.547
|
— | — | — |
0.282
|
— |
0.288
|
— | — | — | — | — |
No JSON data available for plots.