Hg_chrom3_TN10mRNA_6036
Organism: Heterodera glycines Gene Locus: chr3:8580244-8581706 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.048 | 1.257 | 1.147 | 1.243 | 0.701 | 0.847 | 0.465 | 1.201 | 0.934 | 1.38 | 0.364 | 0.707 | 2.586 | 0.982 | 1.287 | 1.502 | 0.394 | 1.092 | 0.924 | 0.53 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5728
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.424
|
0.408
|
0.036
|
0.527
|
0.259
|
0.183
|
0.224
|
0.107
|
0.068
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008006
|
1.000
|
1.000
|
Hsc_gene_174.t1
|
Hsc_gene_174.t1
|
— |
P47163.2 Protein-lysine N-methyltransferase EFM3 [Saccharomyces cerevisiae S288C]
|
XP_032831983.1 protein-lysine N-methyltransferase EEF2KMT-like [Petromyzon marinus]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.823|GO:0005575_0.735|GO:0110165_0.732|GO:0003674_0.719|GO:0008152_0.648|GO:0005622_0.623|GO:0005737_0.608|GO:0003824_0.604|GO:0016740_0.556|GO:0140096_0.549|GO:0032259_0.541|GO:0008168_0.525|GO:0008170_0.525|GO:0008276_0.525|GO:0008757_0.525|GO:0016278_0.525|GO:0016279_0.525|GO:0016741_0.525
|
IPR019410+71-267_100-261+|IPR029063+55-278_127-263+
|
— |
PF10294+100-261+Lysine_methyltransferase
|
— |
PTHR14614+71-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
37349.510
|
6.080
|
-2.000
|
21.622
|
14.715
|
43.243
|
56.757
|
11.111
|
10.511
|
53.453
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
midnightblue
|
700.297
|
514.490
|
476.659
|
630.878
|
596.990
|
506.430
|
676.887
|
498.813
|
484.476
|
1237.512
|
914.782
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.340
|
0.158
|
0.513
|
— | — |
0.428
|
— |
0.584
|
— | — | — | — | — |
No JSON data available for plots.