Hg_chrom3_TN10mRNA_6037
Organism: Heterodera glycines Gene Locus: chr3:8581765-8582523 Feature type: polypeptideProtein Sequence
Length: 144
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.292 | 0.758 | 0.239 | 1.505 | 0.89 | 0.248 | 1.042 | 1.235 | 0.938 | 1.578 | 0.817 | 1.157 | 1.068 | 2.126 | 1.786 | 0.342 | 0.421 | 0.534 | 1.225 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5729
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRFSMNKRSEVLRLYRR
|
18-39
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.100
|
0.945
|
0.038
|
0.186
|
0.025
|
0.034
|
0.042
|
0.024
|
0.036
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI1719715.1 complex 1 protein (LYR family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.944|GO:0110165_0.940|GO:0005622_0.928|GO:0043226_0.902|GO:0043229_0.902|GO:0016020_0.884|GO:0043227_0.846|GO:0043231_0.836|GO:0005737_0.595
|
IPR008011+26-88+|IPR040330+10-124+|IPR045294+26-99+
|
— |
PF05347+26-88+Complex_1_protein_(LYR_family)
|
— |
PTHR14273+10-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
109-144
|
1.000
|
1-108
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
16923.150
|
10.459
|
12.500
|
36.111
|
11.111
|
59.722
|
40.278
|
22.917
|
13.194
|
41.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
124.384
|
162.949
|
186.718
|
177.890
|
189.086
|
177.677
|
261.815
|
184.822
|
38.207
|
12.667
|
23.613
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.571
|
— |
0.646
|
— | — | — | — | — |
No JSON data available for plots.