Hg_chrom3_TN10mRNA_6038
Organism: Heterodera glycines Gene Locus: chr3:8582626-8584718 Feature type: polypeptideProtein Sequence
Length: 470
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.866 | 0.396 | 1.122 | 1.247 | 1.064 | 1.091 | 0.481 | 1.489 | 1.229 | 1.179 | 0.677 | 1.627 | 0.887 | 1.309 | 1.607 | 1.307 | 0.698 | 1.096 | 0.655 | 0.751 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5730
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRKAVELRVAARVRKRKFG
|
50-70
|
0.988
|
— | — | — | — |
0.000
|
— | — |
0.852
|
0.128
|
0.007
|
0.506
|
0.102
|
0.087
|
0.087
|
0.039
|
0.085
|
0.006
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008007
|
1.000
|
1.000
|
Hsc_gene_175.t1
|
Hsc_gene_175.t1
|
— |
P47794.1 G1/S-specific cyclin-E1 [Danio rerio]
|
KAI3420219.1 G1/S-specific cyclin-E1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.826|GO:0005575_0.790|GO:0110165_0.766|GO:0009987_0.760|GO:0005622_0.686|GO:0065007_0.642|GO:0050789_0.628|GO:0003674_0.620|GO:0050794_0.604|GO:0043226_0.586|GO:0016020_0.583|GO:0043229_0.552|GO:0005488_0.517
|
IPR006671+32-157+|IPR013763+66-152+|IPR036915+31-161_323-428+|IPR039361+33-173+|IPR048258+61-92+
|
SM00385+66-152+
|
PF00134+32-157+Cyclin,_N-terminal_domain
|
G3DSA:1.10.472.10:FF:000001+45-159+G2/mitotic-specific_cyclin
|
PTHR10177+33-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33
|
1.000
|
34-470
|
9d0x_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
52862.670
|
7.229
|
6.000
|
27.872
|
9.574
|
47.234
|
52.766
|
15.319
|
12.553
|
50.426
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
551.296
|
94.186
|
114.246
|
471.664
|
872.796
|
889.283
|
2837.208
|
242.176
|
5.831
|
336.963
|
195.049
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.188
|
2.158
|
0.856
|
— |
1.685
|
-1.989
|
3.696
|
— |
6.510
|
— | — | — |
No JSON data available for plots.