Hg_chrom3_TN10mRNA_6041
Organism: Heterodera glycines Gene Locus: chr3:8597246-8598793 Feature type: polypeptideProtein Sequence
Length: 213
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.601 | 0.983 | 0.854 | 1.133 | 2.034 | 1.083 | 0.782 | 1.174 | 1.565 | 1.015 | 0.711 | 1.381 | 1.043 | 1.445 | 0.767 | 1.073 | 0.693 | 0.64 | 0.722 | 1.105 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5732
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.606
|
0.432
|
0.033
|
0.635
|
0.064
|
0.112
|
0.045
|
0.024
|
0.046
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003645
|
2.000
|
1.000
|
Hsc_gene_186.t1
|
Hsc_gene_186.t1
|
— |
Q2YDE7.2 Protein archease [Bos taurus]
|
KAI3420208.1 Protein archease [Globodera pallida]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0009987_0.873|GO:0008152_0.781|GO:0044238_0.762|GO:0044237_0.758|GO:0043170_0.750|GO:0009058_0.748|GO:0044249_0.736|GO:0009059_0.727|GO:0010467_0.719|GO:0006139_0.715|GO:0034654_0.706|GO:0090304_0.701|GO:0141187_0.699|GO:0016070_0.697|GO:0032774_0.694|GO:0006396_0.677|GO:0006399_0.673|GO:0008033_0.670|GO:0005575_0.579|GO:0110165_0.573|GO:0005622_0.506
|
IPR002804+25-193+|IPR023572+57-213+|IPR036820+55-213_56-213+
|
— |
PF01951+57-213+Archease_protein_family_(MTH1598/TM1083)
|
— |
PTHR12682+25-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-45
|
1.000
|
46-213
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
23993.940
|
4.302
|
-15.500
|
27.700
|
10.798
|
47.887
|
52.113
|
10.798
|
16.901
|
47.418
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
68.654
|
85.743
|
48.501
|
54.840
|
60.046
|
67.739
|
154.868
|
203.578
|
30.946
|
23.908
|
26.924
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.051
|
-0.782
|
— | — | — |
1.206
|
1.485
|
— | — | — | — | — | — |
No JSON data available for plots.