SCN Proteipedia

Hg_chrom3_TN10mRNA_6042

Organism: Heterodera glycines Gene Locus: chr3:8598908-8601472 Feature type: polypeptide

Protein Sequence

Length: 219

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.584	1.062	1.162	1.417	1.37	1.171	0.652	0.913	0.913	1.172	0.83	0.806	2.029	0.702	1.025	1.305	0.823	0.761	1.405	0.94	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5733	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.581	0.136	0.008	0.518	0.196	0.332	0.159	0.037	0.138	0.074

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008008	1.000	1.000	Hsc_gene_187.t2	Hsc_gene_187.t1;Hsc_gene_187.t2	—	Q6PGU2.1 Repressor of RNA polymerase III transcription MAF1 homolog [Danio rerio]	KAF7638694.1 RNA helicase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016480	GO:0005575_0.897\|GO:0110165_0.894\|GO:0005622_0.820\|GO:0008150_0.792\|GO:0043226_0.767\|GO:0009987_0.743\|GO:0043229_0.743\|GO:0016020_0.710\|GO:0003674_0.696\|GO:0065007_0.695\|GO:0050789_0.684\|GO:0050794_0.668\|GO:0043227_0.640\|GO:0008152_0.624\|GO:0043231_0.621\|GO:0005488_0.619\|GO:0044238_0.606\|GO:0044237_0.600\|GO:0043170_0.594\|GO:0009058_0.589\|GO:0048519_0.582\|GO:0044249_0.580\|GO:0048523_0.570\|GO:0009059_0.569\|GO:0019222_0.567\|GO:0031323_0.565\|GO:0060255_0.562\|GO:0005737_0.561\|GO:0010467_0.559\|GO:0080090_0.558\|GO:0006139_0.551\|GO:0009889_0.549\|GO:0031326_0.549\|GO:0034654_0.546\|GO:0010556_0.545\|GO:0010468_0.542\|GO:0090304_0.541\|GO:0141187_0.538\|GO:0016070_0.537\|GO:0032774_0.536\|GO:0009892_0.534\|GO:0019219_0.532\|GO:0051252_0.532\|GO:0006351_0.530\|GO:0006355_0.530\|GO:0031324_0.530\|GO:2001141_0.530\|GO:0010605_0.529\|GO:0009890_0.525\|GO:0010558_0.525\|GO:0031327_0.525\|GO:0045892_0.520\|GO:0045934_0.520\|GO:0051253_0.520\|GO:1902679_0.520\|GO:0006359_0.515\|GO:0006383_0.515\|GO:0016480_0.515	IPR015257+2-197_34-181+\|IPR038564+30-185+	—	PF09174+34-181+Maf1_regulator	—	PTHR22504+2-197+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-219	3nr5_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.570	25100.200	4.752	-7.000	26.941	14.155	50.228	49.772	12.329	14.612	48.402

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	442.591	687.890	699.018	376.583	386.089	338.118	246.939	800.014	105.609	531.635	349.053

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.205	-1.006	-0.784	—	—	-0.447	1.141	-1.558	—	—	—	—	—

No JSON data available for plots.

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