Hg_chrom3_TN10mRNA_6043
Organism: Heterodera glycines Gene Locus: chr3:8609244-8611354 Feature type: polypeptideProtein Sequence
Length: 462
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 1.51 | 0.905 | 0.373 | 1.19 | 1.11 | 0.747 | 1.515 | 1.395 | 0.995 | 0.984 | 1.019 | 1.623 | 1.041 | 1.546 | 0.835 | 0.639 | 0.853 | 0.833 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5734
|
— | — |
1.889
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
5.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.833
|
0.150
|
0.118
|
0.431
|
0.123
|
0.065
|
0.042
|
0.005
|
0.155
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003646
|
2.000
|
1.000
|
Hsc_gene_24317.t1
|
Hsc_gene_24317.t1
|
— | — |
KAK0398760.1 hypothetical protein QR680_002739 [Steinernema hermaphroditum];KAK0402957.1 hypothetical protein QR680_016635 [Steinernema hermaphroditum]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+170-260+
|
— |
PF10551+170-260+MULE_transposase_domain
|
— |
PTHR47160+84-405+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-462
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.847
|
52990.170
|
9.410
|
16.000
|
29.221
|
12.987
|
49.784
|
50.216
|
17.100
|
12.121
|
46.104
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
45.167
|
13.962
|
18.990
|
49.477
|
43.081
|
56.710
|
37.938
|
22.273
|
16.905
|
94.016
|
60.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.689
|
1.490
|
— | — |
-0.571
|
-1.453
|
0.909
|
— | — | — | — | — |
No JSON data available for plots.