Hg_chrom3_TN10mRNA_6046
Organism: Heterodera glycines Gene Locus: chr3:8618951-8620746 Feature type: polypeptideProtein Sequence
Length: 384
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 1.575 | 1.278 | 0.629 | 1.302 | 0.935 | 0.62 | 0.781 | 1.042 | 0.88 | 0.552 | 1.991 | 1.302 | 0.801 | 1.594 | 1.153 | 1.153 | 0.829 | 0.801 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5737
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.547
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PPHKRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.916
|
0.069
|
0.002
|
0.339
|
0.046
|
0.026
|
0.034
|
0.024
|
0.012
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008009
|
1.000
|
1.000
|
Hsc_gene_178.t1
|
Hsc_gene_178.t1;Hsc_gene_178.t2
|
— |
Q9XWG3.1 5'-tyrosyl-DNA phosphodiesterase [Caenorhabditis elegans]
|
KAI1730670.1 UBA-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0005515
|
GO:0003674_0.852|GO:0005488_0.794|GO:0008150_0.645|GO:0005515_0.569|GO:0009987_0.568|GO:0065007_0.537|GO:0050789_0.534|GO:0050794_0.525
|
IPR005135+101-341+|IPR009060+8-48+|IPR036691+90-350_93-352+|IPR051547+78-348+
|
— |
PF03372+101-341+Endonuclease/Exonuclease/phosphatase_family|PF14555+11-51+UBA-like_domain
|
— |
PTHR15822+78-348+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-15;55-101;358-384
|
2.000
|
16-54;102-357
|
4fva_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
43690.700
|
4.862
|
-10.000
|
27.865
|
10.417
|
53.385
|
46.615
|
13.021
|
14.844
|
52.083
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1392.667
|
4870.539
|
799.026
|
1165.178
|
1474.136
|
1175.261
|
1877.874
|
1055.416
|
484.405
|
1073.076
|
820.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.838
|
-2.201
|
0.653
|
0.307
|
-0.312
|
0.687
|
-0.259
|
0.974
|
— | — | — | — | — |
No JSON data available for plots.