Hg_chrom3_TN10mRNA_6047
Organism: Heterodera glycines Gene Locus: chr3:8621411-8621898 Feature type: polypeptideProtein Sequence
Length: 107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 1.739 | 1.529 | 0.645 | 0.467 | 0.24 | 0.779 | 0.467 | 1.038 | 1.137 | 0.283 | 0.55 | 0.519 | 1.618 | 2.289 | 0.801 | 0.613 | 1.841 | 1.438 | 1.1 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5738
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.913
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.414
|
0.389
|
0.042
|
0.354
|
0.383
|
0.222
|
0.094
|
0.207
|
0.221
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008010
|
2.000
|
0.000
|
0.000
|
— | — |
O74800.1 Mitochondrial inner membrane protease subunit 1 [Schizosaccharomyces pombe 972h-]
|
KAF7632545.1 Peptidase_S24 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006465
|
GO:0005575_0.896|GO:0110165_0.876|GO:0005622_0.765|GO:0016020_0.760|GO:0005737_0.725|GO:0043226_0.725|GO:0043229_0.711|GO:0043227_0.677|GO:0043231_0.675|GO:0005739_0.562
|
IPR019533+1-85+|IPR036286+1-102+|IPR052064+1-99+
|
— | — | — |
PTHR12383+1-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-107
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
11977.620
|
8.495
|
2.500
|
25.234
|
8.411
|
42.991
|
57.009
|
14.019
|
11.215
|
60.748
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
888.876
|
737.041
|
468.980
|
462.634
|
512.577
|
478.380
|
349.964
|
694.728
|
372.954
|
2220.003
|
1428.410
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.881
|
-0.809
|
— | — | — |
-0.440
|
0.435
|
-0.846
|
-2.656
|
— | — | — | — |
No JSON data available for plots.