SCN Proteipedia

Hg_chrom3_TN10mRNA_6048

Organism: Heterodera glycines Gene Locus: chr3:8622124-8624088 Feature type: polypeptide

Protein Sequence

Length: 417

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.781	1.004	1.177	0.579	2.278	0.861	0.714	0.48	0.746	0.616	1.744	1.129	0.999	0.922	1.077	0.719	1.022	0.908	1.476	0.776	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5739	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.735

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	PTKKRRR,KKPLTKEEKLAKKREA,KKRRRLTGAQKKRFFE	—	—	—	—	—	—	0.000	—	—	0.835	0.053	0.004	0.314	0.032	0.017	0.028	0.001	0.028	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008011	1.000	1.000	Hsc_gene_179.t1	Hsc_gene_179.t1	—	Q8BGC0.1 17S U2 SnRNP complex component HTATSF1 [Mus musculus]	KAF7636461.1 RRM domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0003676\|GO:0003723	GO:0008150_0.928\|GO:0005575_0.916\|GO:0110165_0.911\|GO:0005622_0.890\|GO:0009987_0.880\|GO:0043226_0.834\|GO:0016020_0.820\|GO:0043229_0.817\|GO:0008152_0.788\|GO:0044238_0.777\|GO:0009058_0.771\|GO:0044237_0.770\|GO:0043227_0.760\|GO:0043170_0.758\|GO:0006139_0.750\|GO:0044249_0.748\|GO:0009059_0.744\|GO:0010467_0.744\|GO:0043231_0.738\|GO:0034654_0.725\|GO:0003674_0.724\|GO:0090304_0.723\|GO:0016070_0.717\|GO:0141187_0.714\|GO:0032774_0.711\|GO:0005488_0.691\|GO:0016071_0.685\|GO:0005634_0.678\|GO:0006396_0.626\|GO:0032991_0.626\|GO:0006397_0.611\|GO:0000375_0.608\|GO:0000377_0.608\|GO:0000398_0.608\|GO:0008380_0.608\|GO:0071840_0.549\|GO:0016043_0.531\|GO:1990904_0.531\|GO:0140513_0.519\|GO:0097159_0.512\|GO:0003676_0.503\|GO:0003723_0.503	IPR000504+140-226_141-222_273-358_274-354_301-351+\|IPR012677+139-222_273-357+\|IPR034392+139-230+\|IPR034393+4-385+\|IPR035979+138-357+	SM00360+141-222_274-354+	PF00076+301-351+RNA_recognition_motif	G3DSA:3.30.70.330:FF:000105+272-357+HIV_Tat-specific_factor_1_homolog\|G3DSA:3.30.70.330:FF:000202+139-222+HIV_Tat-specific_factor_1	PTHR15608+4-385+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-128;351-417	1.000	129-350	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.617	47762.330	4.910	-12.000	37.890	9.113	56.835	43.165	17.746	20.144	47.242

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	lightcyan	1239.967	1111.614	1004.777	987.420	1109.009	894.529	1516.035	978.790	1922.425	1132.222	1470.880

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.376	-0.308	—	0.136	-0.296	0.773	—	0.775	—	—	—	—	—

No JSON data available for plots.

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