Hg_chrom3_TN10mRNA_6049
Organism: Heterodera glycines Gene Locus: chr3:8624752-8626550 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 1.198 | 1.047 | 0.94 | 1.061 | 0.932 | 0.613 | 1.515 | 1.414 | 1.392 | 0.459 | 1.426 | 1.347 | 0.874 | 1.67 | 1.169 | 0.646 | 1.102 | 0.233 | 0.891 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5740
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— |
KRIR,KRHSMPLEDYLSKERSGKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.461
|
0.205
|
0.023
|
0.694
|
0.070
|
0.205
|
0.162
|
0.389
|
0.071
|
0.098
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008012
|
1.000
|
1.000
|
Hsc_gene_180.t1
|
Hsc_gene_180.t1
|
— |
O01824.2 Putative pyridoxal kinase [Caenorhabditis elegans]
|
KAI1711132.1 phosphomethylpyrimidine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008478|GO:0009443
|
GO:0008150_0.830|GO:0009987_0.764|GO:0005575_0.736|GO:0110165_0.736|GO:0008152_0.692|GO:0005622_0.656|GO:0003674_0.649|GO:0005737_0.634|GO:0044281_0.595|GO:0044237_0.590|GO:0003824_0.560|GO:0006766_0.549|GO:0006767_0.545|GO:0042816_0.531|GO:0072524_0.531|GO:0016020_0.529|GO:0006793_0.508|GO:0006796_0.508
|
IPR004625+19-320_22-293_23-288+|IPR013749+111-216+|IPR029056+19-323_22-312+
|
— |
PF08543+111-216+Phosphomethylpyrimidine_kinase
|
— |
PTHR10534+19-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-16
|
1.000
|
17-330
|
3pzs_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
37459.820
|
6.809
|
2.000
|
26.364
|
11.212
|
47.273
|
52.727
|
14.242
|
12.121
|
48.485
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
magenta
|
885.691
|
94.535
|
471.648
|
422.635
|
602.041
|
1640.440
|
732.863
|
2602.394
|
145.146
|
1303.580
|
807.108
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.089
|
2.024
|
— |
0.480
|
1.460
|
-1.152
|
0.555
|
-1.682
|
— | — | — | — | — |
No JSON data available for plots.