Hg_chrom3_TN10mRNA_6051
Organism: Heterodera glycines Gene Locus: chr3:8631696-8635848 Feature type: polypeptideProtein Sequence
Length: 1,051
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.394 | 1.328 | 0.778 | 0.558 | 0.936 | 1.708 | 1.019 | 1.665 | 0.698 | 0.861 | 0.822 | 1.063 | 0.687 | 1.391 | 0.602 | 1.645 | 1.045 | 0.605 | 0.22 | 0.196 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5742
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK,KRGVGGQPKGGSGEKRAKN,KRPQLFECDDGNGEKSKQK,GGGMSGKRGGKRGVGGQPKGGSGEKRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.944
|
0.095
|
0.007
|
0.377
|
0.040
|
0.034
|
0.032
|
0.013
|
0.045
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003648
|
1.000
|
2.000
|
Hsc_gene_183.t1;Hsc_gene_183.t2
|
Hsc_gene_183.t1;Hsc_gene_183.t2
|
— | — |
KAF7636453.1 C2H2-type domain-containing protein [Meloidogyne graminicola]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+412-438_414-438+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-175;239-454;497-678;753-1051
|
3.000
|
176-238;455-496;679-752
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
109612.830
|
6.574
|
1.500
|
21.598
|
6.755
|
51.855
|
48.145
|
11.703
|
9.895
|
61.275
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
violet
|
1139.849
|
1876.102
|
1280.373
|
1456.148
|
1369.923
|
1141.677
|
1830.339
|
1106.215
|
993.807
|
468.695
|
693.743
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.779
|
-0.503
|
0.293
|
-0.119
|
-0.249
|
0.691
|
— |
0.868
|
— | — |
2.868
|
— | — |
No JSON data available for plots.