Hg_chrom3_TN10mRNA_6052
Organism: Heterodera glycines Gene Locus: chr3:8636296-8639827 Feature type: polypeptideProtein Sequence
Length: 883
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.751 | 1.264 | 0.947 | 0.547 | 1.265 | 1.568 | 0.539 | 1.189 | 1.183 | 1.622 | 0.635 | 1.199 | 1.164 | 0.653 | 1.063 | 1.343 | 0.798 | 1.184 | 0.523 | 0.466 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5743
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.902
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.541
|
0.081
|
0.005
|
0.480
|
0.144
|
0.257
|
0.172
|
0.103
|
0.092
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008014
|
1.000
|
1.000
|
Hsc_gene_184.t1
|
Hsc_gene_184.t1
|
— |
Q3UJB9.2 Enhancer of mRNA-decapping protein 4 [Mus musculus]
|
KAF7633905.1 Ge1_WD40 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0031087
|
GO:0005575_0.927|GO:0110165_0.926|GO:0005622_0.859|GO:0043226_0.806|GO:0043229_0.780|GO:0005737_0.777|GO:0016020_0.668|GO:0043228_0.626|GO:0043232_0.621|GO:0099080_0.597|GO:0043227_0.571|GO:0035770_0.548|GO:0036464_0.548|GO:0043231_0.544|GO:0000932_0.540|GO:0008150_0.523
|
IPR015943+69-341+|IPR032401+54-371+|IPR036322+99-370+|IPR044938+786-881+|IPR045152+566-881+|IPR049404+741-839+
|
— |
PF16529+54-371+WD40_region_of_Ge1,_enhancer_of_mRNA-decapping_protein|PF21289+741-839+Enhancer_of_mRNA-decapping_protein_4,_C-terminal
|
— |
PTHR15598+566-881+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-883
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
98794.200
|
5.055
|
-19.500
|
24.575
|
8.834
|
50.396
|
49.604
|
11.778
|
12.797
|
48.698
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
1690.575
|
3802.339
|
2121.609
|
2174.106
|
2530.951
|
2162.069
|
3157.226
|
1920.296
|
681.559
|
184.371
|
397.452
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.071
|
-0.944
|
0.143
|
0.188
|
-0.213
|
0.556
|
— |
0.857
|
— | — | — | — | — |
No JSON data available for plots.