SCN Proteipedia

Hg_chrom3_TN10mRNA_6056

Organism: Heterodera glycines Gene Locus: chr3:8666260-8676263 Feature type: polypeptide

Protein Sequence

Length: 2,285

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.865	0.947	0.907	0.694	1.247	0.999	0.505	1.444	1.06	1.898	0.809	0.875	1.58	0.766	1.581	1.163	0.66	0.802	0.741	0.438	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5747	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KQRRHERKKEARRRRVDVLKPYRELKRRRRMK	—	—	—	—	—	—	0.000	—	—	0.848	0.025	0.005	0.235	0.045	0.063	0.088	0.003	0.056	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008017	1.000	1.000	Hsc_gene_189.t1	Hsc_gene_189.t1	—	O75691.3 Small subunit processome component 20 homolog [Homo sapiens]	KAI3420203.1 U3 snoRNP protein [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.932\|GO:0110165_0.926\|GO:0005622_0.883\|GO:0043226_0.858\|GO:0016020_0.852\|GO:0043229_0.836\|GO:0008150_0.804\|GO:0043227_0.782\|GO:0009987_0.762\|GO:0043231_0.762\|GO:0043228_0.731\|GO:0043232_0.729\|GO:0003674_0.698\|GO:0005634_0.695\|GO:0005488_0.658\|GO:0031974_0.649\|GO:0031981_0.649\|GO:0043233_0.649\|GO:0070013_0.649\|GO:0008152_0.636\|GO:0043170_0.636\|GO:0009058_0.629\|GO:0044238_0.627\|GO:0071840_0.623\|GO:0009059_0.622\|GO:0044237_0.622\|GO:0044249_0.622\|GO:0010467_0.612\|GO:0006139_0.605\|GO:0090304_0.594\|GO:0034654_0.585\|GO:0005730_0.583\|GO:0141187_0.581\|GO:0016070_0.577\|GO:0032774_0.577\|GO:0097159_0.577\|GO:0032991_0.575\|GO:0065007_0.567\|GO:0003676_0.557\|GO:0044085_0.557\|GO:0050789_0.545\|GO:0071944_0.542\|GO:0005886_0.541\|GO:0003723_0.540\|GO:0006396_0.540\|GO:0050794_0.533\|GO:0022613_0.528\|GO:0042254_0.526\|GO:0016072_0.522\|GO:0006364_0.519\|GO:0042274_0.514	IPR011430+321-1005+\|IPR011989+1556-1969+\|IPR016024+520-1228_865-1852_1687-2179+\|IPR046523+1268-1497+\|IPR052575+58-2282+	—	PF07539+321-1005+U3_small_nucleolar_RNA-associated_protein_20,_N-terminal\|PF20416+1268-1497+U3_small_nucleolar_RNA-associated_protein_20,_C-terminal	—	PTHR17695+58-2282+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1185-1237;2235-2285	2.000	1-1184;1238-2234	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.676	260155.310	8.142	47.000	28.446	11.028	48.578	51.422	15.974	12.473	44.201

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	3044.276	4867.012	3566.472	4015.851	4016.462	3283.098	3428.240	2348.905	2464.291	1898.227	2140.826

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.678	-0.414	0.280	—	-0.276	—	-0.589	0.688	—	—	—	—	—

No JSON data available for plots.

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