Hg_chrom3_TN10mRNA_6059
Organism: Heterodera glycines Gene Locus: chr3:8680038-8684381 Feature type: polypeptideProtein Sequence
Length: 593
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 0.98 | 0.981 | 0.581 | 1.096 | 1.124 | 0.843 | 1.349 | 1.012 | 1.117 | 0.69 | 1.29 | 1.171 | 0.973 | 1.858 | 1.06 | 0.774 | 0.894 | 1.686 | 0.942 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5749
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-34
|
0.925
|
1.000
|
0.000
|
0.000
|
0.135
|
0.228
|
0.064
|
0.288
|
0.165
|
0.144
|
0.198
|
0.050
|
0.225
|
0.817
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003649
|
2.000
|
1.000
|
Hsc_gene_191.t1
|
Hsc_gene_191.t1
|
— |
Q9XU75.2 Putative carboxypeptidase suro-1 [Caenorhabditis elegans]
|
KAI1711122.1 zinc carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.690|GO:0005575_0.642|GO:0110165_0.642|GO:0008150_0.623|GO:0003824_0.550
|
IPR000834+186-485_192-488_212-224_234-248_326-334_382-395+|IPR003146+71-142+|IPR003582+556-593_557-593+|IPR036990+65-149+
|
SM00631+186-485+
|
PF00246+192-488+Zinc_carboxypeptidase|PF01549+556-593+ShK_domain-like|PF02244+71-142+Carboxypeptidase_activation_peptide
|
G3DSA:3.40.630.10:FF:000070+173-501+Putative_carboxypeptidase_suro-1
|
PTHR11705+23-499+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-593
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.830
|
67760.750
|
8.958
|
18.000
|
28.331
|
12.310
|
49.073
|
50.927
|
16.358
|
11.973
|
48.061
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
738.301
|
225.217
|
159.198
|
187.432
|
724.794
|
4831.363
|
464.590
|
628.530
|
6.508
|
517.263
|
298.368
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.731
|
-0.402
|
0.345
|
1.919
|
2.752
|
-3.368
|
-3.056
|
— |
-6.470
|
5.110
|
— | — | — |