Hg_chrom3_TN10mRNA_6061
Organism: Heterodera glycines Gene Locus: chr3:8688035-8691257 Feature type: polypeptideProtein Sequence
Length: 644
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.921 | 0.686 | 0.988 | 0.696 | 0.802 | 1.274 | 0.665 | 1.32 | 1.001 | 0.986 | 0.471 | 1.37 | 1.855 | 1.075 | 1.68 | 1.686 | 0.815 | 0.706 | 1.553 | 0.731 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5751
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.699
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRRK,RRRARETTEREAKQRKT
|
43-83
|
0.998
|
20-70
|
0.999
|
— | — |
0.000
|
— | — |
0.096
|
0.081
|
0.056
|
0.209
|
0.216
|
0.225
|
0.453
|
0.046
|
0.303
|
0.621
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008020
|
1.000
|
1.000
|
Hsc_gene_193.t1
|
Hsc_gene_193.t1
|
— |
Q9XU75.2 Putative carboxypeptidase suro-1 [Caenorhabditis elegans]
|
KAI1730721.1 zinc carboxypeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.704|GO:0005575_0.670|GO:0110165_0.670|GO:0008150_0.633|GO:0003824_0.510
|
IPR000834+242-545_251-549_268-280_291-305_291-313_388-396_442-455_445-455+|IPR003146+109-182+|IPR003582+596-632+|IPR036990+105-200+
|
SM00631+242-545+
|
PF00246+251-549+Zinc_carboxypeptidase|PF01549+596-632+ShK_domain-like|PF02244+109-182+Carboxypeptidase_activation_peptide
|
G3DSA:3.40.630.10:FF:000056+233-561+Zinc_carboxypeptidase
|
PTHR11705+87-557+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
175-222
|
2.000
|
1-174;223-644
|
1dtd_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
72761.030
|
8.419
|
15.500
|
24.224
|
13.820
|
48.913
|
51.087
|
13.975
|
10.248
|
50.932
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
448.842
|
266.844
|
174.158
|
781.733
|
653.468
|
1579.385
|
108.871
|
255.024
|
26.145
|
511.771
|
303.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.843
|
1.414
|
2.274
|
-0.290
|
1.289
|
-3.850
|
-2.743
|
-1.084
|
-4.429
|
5.098
|
— | — | — |
No JSON data available for plots.