Hg_chrom3_TN10mRNA_6062
Organism: Heterodera glycines Gene Locus: chr3:8692898-8695518 Feature type: polypeptideProtein Sequence
Length: 549
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 1.228 | 0.762 | 1.068 | 0.971 | 0.841 | 0.759 | 1.366 | 1.093 | 1.009 | 0.773 | 0.536 | 1.973 | 1.156 | 1.152 | 1.743 | 0.866 | 0.58 | 0.841 | 0.375 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5752
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— |
KRKR,KRRS,RKRR,IRSKR,RRSAGGEFAEVETLKTRIR
|
— | — |
51-73
|
1.000
|
— | — |
0.000
|
— | — |
0.120
|
0.023
|
0.006
|
0.200
|
0.350
|
0.183
|
0.379
|
0.009
|
0.610
|
0.277
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003650
|
2.000
|
1.000
|
Hsc_gene_194.t2
|
Hsc_gene_194.t1;Hsc_gene_194.t2
|
— | — |
KAI6237788.1 Zona pellucida domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001507+104-410_104-414+
|
SM00241+104-410+
|
— | — |
PTHR46560+96-542+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
194-238;544-549
|
2.000
|
1-193;239-543
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.914
|
60322.840
|
7.945
|
11.500
|
23.497
|
12.204
|
49.545
|
50.455
|
13.479
|
10.018
|
54.645
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
325.518
|
205.606
|
61.584
|
45.293
|
256.721
|
581.345
|
188.067
|
121.158
|
14.995
|
865.479
|
500.986
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.970
|
-2.319
|
— |
2.470
|
1.195
|
-1.619
|
-2.376
|
0.779
|
-5.984
|
— | — | — | — |
No JSON data available for plots.