Hg_chrom3_TN10mRNA_6065
Organism: Heterodera glycines Gene Locus: chr3:8702001-8707076 Feature type: polypeptideProtein Sequence
Length: 1,111
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.848 | 0.942 | 0.966 | 0.962 | 0.915 | 1.131 | 0.482 | 1.89 | 1.02 | 1.192 | 0.968 | 1.271 | 1.35 | 0.969 | 1.378 | 1.582 | 0.944 | 0.723 | 0.485 | 0.582 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5754
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKRP,RKSK,PTKKRKM,KGKTKKTRTA,KRRQRSEVGRRRTKS,KKRKMVTQPNQKRRQRS,RRRTKSGDGTAKMKRKESR,RRTKSGDGTAKMKRKESRR
|
38-104
|
0.781
|
65-97
|
1.000
|
— | — |
0.000
|
— | — |
0.320
|
0.128
|
0.017
|
0.774
|
0.144
|
0.299
|
0.556
|
0.131
|
0.198
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008022
|
1.000
|
1.000
|
Hsc_gene_196.t1
|
Hsc_gene_196.t1;Hsc_gene_196.t2
|
— |
O76373.2 Cytosolic carboxypeptidase 1 [Caenorhabditis elegans]
|
KAI3420189.1 Cytosolic carboxypeptidase 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0008150_0.859|GO:0005575_0.759|GO:0110165_0.757|GO:0005622_0.703|GO:0003674_0.571|GO:0016020_0.570|GO:0008152_0.513|GO:0043170_0.513|GO:0043226_0.513|GO:0032501_0.504
|
IPR000834+841-997+|IPR040626+591-681+|IPR050821+427-1108+
|
— |
PF00246+841-997+Zinc_carboxypeptidase|PF18027+591-681+Cytosolic_carboxypeptidase_N-terminal_domain
|
— |
PTHR12756+427-1108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;79-220;506-557;702-790
|
4.000
|
2-78;221-505;558-701;791-1111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
124917.920
|
8.942
|
47.000
|
27.723
|
11.251
|
53.015
|
46.985
|
16.922
|
10.801
|
50.135
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2154.019
|
2845.536
|
2374.151
|
1744.912
|
1633.994
|
2136.587
|
3216.615
|
2944.860
|
1971.518
|
1608.947
|
1764.335
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.491
|
-0.843
|
-0.336
|
-0.127
|
0.401
|
0.601
|
0.356
|
0.271
|
— | — | — | — | — |
No JSON data available for plots.