Hg_chrom3_TN10mRNA_6067
Organism: Heterodera glycines Gene Locus: chr3:8708225-8711114 Feature type: polypeptideProtein Sequence
Length: 404
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 0.921 | 1.44 | 0.597 | 1.031 | 1.015 | 0.413 | 1.98 | 0.935 | 1.405 | 0.938 | 1.019 | 1.994 | 0.904 | 1.212 | 1.025 | 0.893 | 1.05 | 0.952 | 0.582 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5756
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_197
|
— |
1-Not_Clustered
|
0.601
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-35
|
0.790
|
1.000
|
0.000
|
0.000
|
0.262
|
0.153
|
0.118
|
0.268
|
0.920
|
0.206
|
0.276
|
0.042
|
0.365
|
0.221
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003651
|
2.000
|
1.000
|
Hsc_gene_197.t1
|
Hsc_gene_197.t1
|
— |
Q9D1Q6.1 Endoplasmic reticulum resident protein 44 [Mus musculus]
|
KAI1711079.1 thioredoxin-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.887|GO:0110165_0.887|GO:0005622_0.762|GO:0008150_0.754|GO:0016020_0.705|GO:0043226_0.673|GO:0009987_0.668|GO:0005737_0.659|GO:0043229_0.659|GO:0043227_0.635|GO:0043231_0.618|GO:0071944_0.608|GO:0005886_0.573|GO:0003674_0.532
|
IPR013766+18-147_37-139+|IPR036249+31-142_150-247_244-372+|IPR052643+18-404+
|
— |
PF00085+37-139+Thioredoxin|PF13848+174-352+Thioredoxin-like_domain
|
— |
PTHR46295+18-404+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-404
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
46576.970
|
6.502
|
0.000
|
30.198
|
14.356
|
50.743
|
49.257
|
16.089
|
14.109
|
47.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
greenyellow
|
1415.752
|
1338.074
|
987.153
|
883.479
|
1170.816
|
2244.907
|
1644.339
|
2044.941
|
723.047
|
1783.991
|
1329.301
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.667
|
-0.736
|
— |
0.375
|
0.953
|
-0.441
|
— | — | — | — | — | — | — |