Hg_chrom3_TN10mRNA_6069
Organism: Heterodera glycines Gene Locus: chr3:8711312-8713676 Feature type: polypeptideProtein Sequence
Length: 457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.17 | 1.12 | 0.796 | 0.981 | 1.094 | 1.122 | 0.729 | 0.766 | 0.875 | 1.508 | 0.63 | 1.802 | 0.912 | 1.052 | 1.34 | 1.0 | 1.04 | 0.995 | 0.168 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5757
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
plastid
|
— |
RKRR,SSRKR
|
13-44
|
0.958
|
17-52
|
0.999
|
— | — |
0.000
|
— | — |
0.098
|
0.538
|
0.717
|
0.271
|
0.043
|
0.124
|
0.253
|
0.025
|
0.043
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008023
|
1.000
|
1.000
|
Hsc_gene_198.t1
|
Hsc_gene_198.t1
|
— |
Q33DR2.1 All trans-polyprenyl-diphosphate synthase PDSS1 [Mus musculus]
|
KAI1711078.1 polyprenyl synthetase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004659|GO:0008299
|
GO:0005575_0.808|GO:0008150_0.800|GO:0110165_0.792|GO:0009987_0.748|GO:0005622_0.685|GO:0003674_0.653|GO:0016020_0.652|GO:0005737_0.643|GO:0008152_0.640|GO:0044237_0.621|GO:0009058_0.592|GO:0044249_0.579|GO:0043226_0.564|GO:0043229_0.541|GO:0043227_0.517|GO:0043231_0.509
|
IPR000092+131-406_133-381+|IPR008949+117-457_121-455+|IPR033749+213-227_338-350+
|
— |
PF00348+131-406+Polyprenyl_synthetase
|
— |
PTHR12001+124-455+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-457
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
49856.190
|
7.020
|
2.500
|
23.195
|
6.565
|
45.733
|
54.267
|
12.254
|
10.941
|
53.611
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1191.488
|
1766.575
|
1143.265
|
901.894
|
1105.753
|
1008.488
|
1605.507
|
1017.108
|
671.145
|
1503.680
|
1146.879
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.858
|
-1.107
|
-0.233
|
0.262
|
— |
0.682
|
— |
0.802
|
— | — | — | — | — |
No JSON data available for plots.