Hg_chrom3_TN10mRNA_6070
Organism: Heterodera glycines Gene Locus: chr3:8714244-8715122 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.179 | 0.943 | 0.737 | 0.466 | 1.239 | 3.119 | 0.724 | 0.676 | 0.751 | 0.73 | 1.638 | 1.987 | 0.375 | 1.04 | 1.517 | 0.483 | 0.665 | 0.819 | 0.52 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5758
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.486
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
QKKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.556
|
0.196
|
0.009
|
0.593
|
0.140
|
0.093
|
0.181
|
0.003
|
0.095
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008024
|
1.000
|
1.000
|
Hsc_gene_199.t1
|
Hsc_gene_199.t1
|
— |
O61749.4 Probable signal recognition particle 19 kDa protein [Caenorhabditis elegans]
|
KAI1722230.1 SRP19 protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006614|GO:0008312|GO:0048500
|
GO:0005575_0.930|GO:0110165_0.921|GO:0005622_0.885|GO:0016020_0.729|GO:0043226_0.723|GO:0043229_0.709|GO:0043227_0.655|GO:0043231_0.633|GO:0005737_0.616|GO:0008150_0.610|GO:0005634_0.593|GO:0009987_0.573|GO:0003674_0.561|GO:0005488_0.561
|
IPR002778+10-144_17-125+|IPR036521+3-139_7-129+
|
— |
PF01922+17-125+SRP19_protein
|
— |
PTHR17453+10-144+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
50-148
|
1.000
|
1-49
|
7qwq_q
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
16821.170
|
10.371
|
11.000
|
31.081
|
6.081
|
54.730
|
45.270
|
19.595
|
11.486
|
43.919
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkturquoise
|
856.709
|
490.377
|
809.369
|
831.458
|
905.426
|
1209.168
|
989.723
|
792.829
|
1153.518
|
622.334
|
849.984
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.493
|
0.625
|
0.148
|
— |
0.433
|
-0.278
|
-0.713
|
0.463
|
— | — | — | — | — |
No JSON data available for plots.