SCN Proteipedia

Hg_chrom3_TN10mRNA_6071

Organism: Heterodera glycines Gene Locus: chr3:8716690-8719561 Feature type: polypeptide

Protein Sequence

Length: 530

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.658	1.667	1.063	0.065	1.006	2.129	0.674	1.887	0.922	1.224	0.543	1.887	1.205	1.125	1.001	1.213	0.866	0.772	0.726	0.721	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5759	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.797	0.105	0.002	0.362	0.077	0.210	0.144	0.019	0.039	0.011

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008025	1.000	1.000	Hsc_gene_200.t1	Hsc_gene_200.t1	—	G5EFT5.1 Heat shock transcription factor hsf-1 [Caenorhabditis elegans]	KAI3420193.1 heat-shock transcription factor-1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355\|GO:0043565	GO:0008150_0.900\|GO:0003674_0.789\|GO:0009987_0.778\|GO:0005488_0.764\|GO:0050789_0.745\|GO:0065007_0.745\|GO:0005575_0.736\|GO:0050794_0.733\|GO:0110165_0.710\|GO:0005622_0.675\|GO:0008152_0.666\|GO:0019222_0.666\|GO:0031323_0.659\|GO:0044237_0.659\|GO:0097159_0.648\|GO:0016020_0.637\|GO:0003676_0.634\|GO:0043170_0.626\|GO:0043226_0.623\|GO:0043229_0.613\|GO:0009058_0.612\|GO:0003677_0.611\|GO:0060255_0.611\|GO:0050896_0.604\|GO:0009059_0.599\|GO:0044249_0.599\|GO:0009889_0.595\|GO:0010467_0.595\|GO:0010556_0.595\|GO:0031326_0.595\|GO:0010468_0.594\|GO:0044238_0.591\|GO:0080090_0.576\|GO:0043227_0.575\|GO:0043565_0.573\|GO:0043231_0.557\|GO:0006139_0.551\|GO:0034654_0.548\|GO:0016070_0.546\|GO:0090304_0.546\|GO:0141187_0.542\|GO:0019219_0.540\|GO:0032774_0.540\|GO:0051252_0.540\|GO:0006351_0.534\|GO:0006355_0.527\|GO:2001141_0.527\|GO:0006950_0.525\|GO:0005634_0.523\|GO:0003690_0.508\|GO:1990837_0.508\|GO:0000976_0.505\|GO:0001067_0.505	IPR000232+63-169_67-90_67-169_105-117_118-130+\|IPR027725+32-403+\|IPR036388+59-171+\|IPR036390+64-169+	SM00415+63-169+	PF00447+67-169+HSF-type_DNA-binding	G3DSA:1.10.10.10:FF:000027+59-171+Heat_shock_transcription_factor_1	PTHR10015+32-403+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	317-530	1.000	1-316	5d5v_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.643	59902.730	5.762	-8.000	24.151	11.509	53.396	46.604	12.264	11.887	49.245

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	orange	995.403	1189.340	986.290	858.028	969.994	879.398	1070.312	1222.169	1393.789	618.721	950.893

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.500	-0.608	—	0.145	-0.127	0.293	0.371	—	—	—	—	—	—

No JSON data available for plots.

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