Hg_chrom3_TN10mRNA_6072
Organism: Heterodera glycines Gene Locus: chr3:8719720-8720487 Feature type: polypeptideProtein Sequence
Length: 145
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.443 | 0.962 | 0.502 | 0.951 | 0.69 | 2.299 | 1.314 | 0.345 | 0.613 | 0.373 | 0.627 | 1.623 | 1.149 | 1.326 | 1.267 | 1.675 | 0.791 | 0.836 | 0.531 | 0.203 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5760
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide|nuclear_localization_signal
|
mitochondrion
|
— | — |
1-21
|
0.884
|
29-71
|
0.845
|
— | — |
0.027
|
— | — |
0.308
|
0.693
|
0.011
|
0.372
|
0.220
|
0.074
|
0.184
|
0.051
|
0.200
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008026
|
1.000
|
1.000
|
Hsc_gene_201.t1
|
Hsc_gene_201.t1
|
— |
Q09254.1 Hemiasterlin resistant protein 1 [Caenorhabditis elegans]
|
KAI6215001.1 CHCH domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.910|GO:0005622_0.808|GO:0016020_0.792|GO:0043226_0.764|GO:0043229_0.750|GO:0005737_0.749|GO:0043227_0.738|GO:0008150_0.730|GO:0043231_0.716|GO:0009987_0.671
|
IPR010625+109-141+
|
— |
PF06747+109-141+CHCH_domain
|
— |
PTHR13523+13-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-145
|
0.000
|
— |
9oyr_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
15134.850
|
9.432
|
5.500
|
17.931
|
6.207
|
47.586
|
52.414
|
11.034
|
6.897
|
62.069
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
7320.343
|
2271.921
|
4552.660
|
6678.821
|
8871.243
|
8828.100
|
4936.257
|
10841.266
|
8059.684
|
8364.137
|
8233.657
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
1.419
|
0.661
|
0.377
|
— |
-0.827
|
— |
-0.993
|
— | — | — | — | — |
No JSON data available for plots.