Hg_chrom3_TN10mRNA_6073
Organism: Heterodera glycines Gene Locus: chr3:8721053-8725456 Feature type: polypeptideProtein Sequence
Length: 841
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.995 | 0.857 | 0.994 | 1.107 | 1.249 | 0.732 | 0.552 | 1.367 | 1.083 | 1.543 | 0.486 | 0.839 | 1.519 | 1.006 | 1.383 | 1.325 | 0.741 | 0.865 | 0.915 | 0.664 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5761
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
45-70
|
0.970
|
— | — | — | — |
0.000
|
— | — |
0.360
|
0.268
|
0.022
|
0.605
|
0.216
|
0.292
|
0.304
|
0.023
|
0.098
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008027
|
1.000
|
1.000
|
Hsc_gene_202.t1
|
Hsc_gene_202.t1;Hsc_gene_202.t2
|
— |
Q5VS72.1 Protein arginine N-methyltransferase 7 [Oryza sativa Japonica Group]
|
KAI3420184.1 protein arginine methyltransferase 10 [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0016274|GO:0018216
|
GO:0008150_0.855|GO:0003674_0.809|GO:0009987_0.741|GO:0005575_0.686|GO:0110165_0.658|GO:0003824_0.654|GO:0016740_0.608|GO:0008152_0.607|GO:0005622_0.579|GO:0008168_0.569|GO:0016741_0.569|GO:0140096_0.567|GO:0043170_0.560|GO:0008276_0.539|GO:0008170_0.535|GO:0044238_0.535|GO:0008757_0.505|GO:0016273_0.505|GO:0016274_0.505|GO:0065007_0.503
|
IPR011990+58-189_65-177+|IPR019734+140-173+|IPR025799+162-501+|IPR029063+190-333_193-511+
|
— |
PF06325+212-316+Ribosomal_protein_L11_methyltransferase_(PrmA)
|
— |
PTHR11006+162-501+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-14
|
1.000
|
15-841
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.506
|
94179.140
|
5.454
|
-13.500
|
25.684
|
11.653
|
46.017
|
53.983
|
12.723
|
12.961
|
50.297
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1091.680
|
1843.492
|
1370.153
|
1441.282
|
1634.185
|
1256.293
|
1757.299
|
1019.859
|
603.073
|
452.837
|
517.223
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.659
|
-0.492
|
0.182
|
0.149
|
-0.365
|
0.494
|
-0.403
|
0.926
|
— | — | — | — | — |
No JSON data available for plots.