Hg_chrom3_TN10mRNA_6074
Organism: Heterodera glycines Gene Locus: chr3:8726055-8727879 Feature type: polypeptideProtein Sequence
Length: 314
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.444 | 1.185 | 1.042 | 0.988 | 1.752 | 1.715 | 0.493 | 1.752 | 0.92 | 1.592 | 0.627 | 1.124 | 1.769 | 0.857 | 1.04 | 0.864 | 0.522 | 0.676 | 2.45 | 0.843 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5762
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
RKLWYLLRPGAERRVRQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.656
|
0.205
|
0.005
|
0.519
|
0.462
|
0.160
|
0.332
|
0.016
|
0.047
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008028
|
1.000
|
1.000
|
Hsc_gene_203.t1
|
Hsc_gene_203.t1
|
— |
Q08BY5.1 2-oxoglutarate and iron-dependent oxygenase JMJD4 [Danio rerio]
|
KAI1722597.1 jmjC domain, hydroxylase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.843|GO:0005575_0.815|GO:0110165_0.809|GO:0009987_0.798|GO:0005622_0.735|GO:0003674_0.684|GO:0016043_0.646|GO:0071840_0.646|GO:0065007_0.606|GO:0016020_0.598|GO:0050789_0.591|GO:0050794_0.568|GO:0043226_0.537|GO:0043229_0.519|GO:0005488_0.516|GO:0008152_0.503
|
IPR003347+24-182_66-165+|IPR050910+18-276+
|
SM00558+24-182+
|
PF02373+66-165+JmjC_domain,_hydroxylase
|
— |
PTHR12480+18-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-314
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
37195.910
|
4.594
|
-16.500
|
28.981
|
15.924
|
50.000
|
50.000
|
12.739
|
16.242
|
39.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
324.293
|
927.193
|
166.326
|
132.650
|
147.859
|
82.908
|
188.955
|
109.528
|
85.826
|
696.131
|
434.572
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.713
|
-2.942
|
— | — |
-0.821
|
1.199
|
— |
0.930
|
— | — | — | — | — |
No JSON data available for plots.