Hg_chrom3_TN10mRNA_6076
Organism: Heterodera glycines Gene Locus: chr3:8728767-8731164 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.352 | 0.744 | 0.793 | 0.802 | 0.533 | 0.522 | 0.588 | 1.017 | 1.357 | 2.003 | 0.396 | 1.539 | 2.988 | 0.559 | 0.593 | 0.955 | 0.762 | 1.321 | 1.565 | 0.427 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5764
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.160
|
0.135
|
0.011
|
0.213
|
0.823
|
0.436
|
0.616
|
0.001
|
0.274
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008030
|
1.000
|
1.000
|
Hsc_gene_205.t1
|
Hsc_gene_205.t1
|
— | — |
CAD5230098.1 unnamed protein product [Bursaphelenchus xylophilus];CAG9120978.1 unnamed protein product [Bursaphelenchus xylophilus]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0016485|GO:0042500
|
GO:0008150_0.949|GO:0009987_0.902|GO:0005575_0.819|GO:0110165_0.819|GO:0051179_0.768|GO:0016020_0.699|GO:0005622_0.650|GO:0071840_0.586|GO:0032502_0.585|GO:0048856_0.585|GO:0065007_0.585|GO:0071944_0.585|GO:0005886_0.584|GO:0016043_0.582|GO:0050789_0.572|GO:0030154_0.567|GO:0048869_0.567|GO:0050794_0.552|GO:0005737_0.550|GO:0043226_0.535|GO:0043227_0.510|GO:0043229_0.510|GO:0043231_0.510
|
IPR001108+62-233_62-235+|IPR042524+226-336+
|
— |
PF01080+62-233+Presenilin
|
— |
PTHR10202+62-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-344
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
38088.990
|
5.547
|
-3.500
|
15.116
|
16.279
|
31.686
|
68.314
|
7.558
|
7.558
|
49.419
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
red
|
321.541
|
141.805
|
156.525
|
115.515
|
219.063
|
291.627
|
206.258
|
168.017
|
33.122
|
894.844
|
525.535
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.433
|
-0.328
|
0.892
|
0.426
|
-0.491
|
-0.902
|
0.437
|
-4.867
|
— | — | — | — |
No JSON data available for plots.