Hg_chrom3_TN10mRNA_6079
Organism: Heterodera glycines Gene Locus: chr3:8733130-8733883 Feature type: polypeptideProtein Sequence
Length: 158
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.81 | 0.736 | 1.726 | 0.218 | 2.426 | 0.811 | 0.829 | 0.316 | 1.688 | 1.112 | 1.055 | 2.234 | 1.758 | 0.122 | 1.421 | 0.723 | 0.519 | 0.384 | 0.0 | 0.931 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5766
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.386
|
0.209
|
0.048
|
0.702
|
0.167
|
0.180
|
0.146
|
0.024
|
0.328
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003652
|
2.000
|
1.000
|
Hsc_gene_207.t1
|
Hsc_gene_207.t1
|
— |
Q09665.1 Troponin C, isoform 2 [Caenorhabditis elegans]
|
KAI1722197.1 EF hand domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.803|GO:0110165_0.794|GO:0005622_0.784|GO:0005737_0.655|GO:0043226_0.624|GO:0003674_0.622|GO:0043229_0.605|GO:0016020_0.595|GO:0008150_0.593|GO:0005488_0.576
|
IPR002048+19-54_23-51_25-84_55-90_59-87_95-130_98-154_99-127+|IPR011992+14-154+|IPR018247+68-80+|IPR050230+17-154+
|
SM00054+23-51_59-87_99-127+
|
PF13499+25-84_98-154+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000001+12-156+Calmodulin_1
|
PTHR23048+17-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
139-158
|
1.000
|
1-138
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.974
|
18302.450
|
4.218
|
-15.500
|
38.608
|
10.127
|
53.165
|
46.835
|
14.557
|
24.051
|
38.608
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
224.810
|
3.049
|
93.969
|
75.835
|
26.076
|
248.672
|
168.981
|
440.364
|
0.000
|
587.192
|
335.538
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.712
|
4.495
|
— |
-1.567
|
3.263
|
-0.544
|
0.721
|
-1.238
|
-9.985
|
7.102
|
-4.378
|
— | — |
No JSON data available for plots.