Hg_chrom3_TN10mRNA_6080
Organism: Heterodera glycines Gene Locus: chr3:8734835-8736731 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 0.698 | 0.546 | 0.311 | 1.051 | 0.539 | 0.787 | 1.201 | 1.268 | 1.42 | 0.637 | 1.237 | 2.92 | 1.271 | 1.226 | 1.073 | 0.738 | 1.001 | 1.848 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5767
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.126
|
0.279
|
0.009
|
0.196
|
0.888
|
0.072
|
0.163
|
0.008
|
0.097
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008032
|
1.000
|
1.000
|
Hsc_gene_208.t1
|
Hsc_gene_208.t1
|
— |
Q80W94.1 2-acylglycerol O-acyltransferase 2 [Mus musculus]
|
KAI3420179.1 2-acylglycerol O-acyltransferase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008374
|
GO:0008150_0.863|GO:0003674_0.814|GO:0009987_0.813|GO:0003824_0.665|GO:0005575_0.643|GO:0110165_0.643|GO:0016740_0.637|GO:0016746_0.628|GO:0008152_0.623|GO:0016747_0.620|GO:0008374_0.612|GO:0044238_0.608|GO:0009058_0.604|GO:0044237_0.602|GO:0016020_0.584|GO:0006629_0.567|GO:0005886_0.566|GO:0008610_0.566|GO:0071944_0.566|GO:0044255_0.563|GO:0016411_0.533|GO:0005622_0.513|GO:0044249_0.511|GO:0043226_0.504
|
IPR007130+24-331+
|
— |
PF03982+24-331+Diacylglycerol_acyltransferase
|
— |
PTHR12317+14-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
38140.250
|
8.635
|
7.000
|
21.922
|
18.018
|
39.039
|
60.961
|
12.613
|
9.309
|
45.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellowgreen
|
424.126
|
434.106
|
180.721
|
436.261
|
370.953
|
315.135
|
814.548
|
1068.777
|
247.089
|
312.546
|
284.493
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.495
|
-0.130
|
1.381
|
-0.265
|
— |
1.380
|
1.677
|
— | — | — | — | — | — |
No JSON data available for plots.