Hg_chrom3_TN10mRNA_6081
Organism: Heterodera glycines Gene Locus: chr3:8737394-8741446 Feature type: polypeptideProtein Sequence
Length: 651
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.232 | 1.393 | 0.726 | 0.583 | 0.589 | 1.536 | 0.731 | 1.536 | 0.888 | 0.976 | 0.326 | 0.994 | 0.939 | 2.068 | 1.191 | 1.734 | 0.831 | 0.815 | 0.591 | 0.181 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5768
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RNCKRFK,RRGGEWRQTISDLERRHQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.235
|
0.149
|
0.012
|
0.679
|
0.131
|
0.406
|
0.248
|
0.028
|
0.335
|
0.162
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008033
|
1.000
|
1.000
|
Hsc_gene_209.t1
|
Hsc_gene_209.t1
|
— | — |
KAF7638662.1 IMD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007009
|
GO:0008150_0.958|GO:0005575_0.919|GO:0110165_0.915|GO:0003674_0.864|GO:0005488_0.834|GO:0005515_0.771|GO:0009987_0.730|GO:0065007_0.720|GO:0016020_0.713|GO:0005622_0.711|GO:0050896_0.622|GO:0016043_0.584|GO:0071840_0.584|GO:0005737_0.564|GO:0043226_0.532|GO:0050789_0.530|GO:0050794_0.530|GO:0043229_0.518
|
IPR013606+15-119+|IPR027267+6-206_14-194+|IPR051412+313-641+
|
— |
PF08397+15-119+IRSp53/MIM_homology_domain
|
— |
PTHR45691+313-641+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
193-651
|
1.000
|
1-192
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.966
|
69229.410
|
8.024
|
13.000
|
18.587
|
7.834
|
47.773
|
52.227
|
11.060
|
7.527
|
61.751
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
lightcyan
|
1333.338
|
1823.727
|
1363.073
|
1293.305
|
1328.759
|
1250.834
|
2293.988
|
1113.976
|
869.386
|
1255.940
|
1090.274
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.650
|
-0.633
|
— | — | — |
0.885
|
-0.273
|
1.185
|
— | — | — | — | — |
No JSON data available for plots.