Hg_chrom3_TN10mRNA_6083
Organism: Heterodera glycines Gene Locus: chr3:8745594-8746814 Feature type: polypeptideProtein Sequence
Length: 164
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.922 | 0.851 | 0.998 | 0.421 | 1.118 | 1.251 | 0.871 | 0.61 | 1.762 | 1.566 | 0.924 | 1.435 | 0.847 | 0.235 | 0.996 | 0.784 | 1.1 | 1.109 | 0.938 | 1.076 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5770
|
— | — |
2.222
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.656
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.412
|
0.058
|
0.017
|
0.498
|
0.369
|
0.284
|
0.713
|
0.036
|
0.076
|
0.183
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003653
|
2.000
|
1.000
|
Hsc_gene_215.t1
|
Hsc_gene_215.t1
|
— |
P25160.5 ADP-ribosylation factor-like protein 1 [Drosophila melanogaster]
|
KAI3420172.1 Arf GTPase arl1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.884|GO:0110165_0.876|GO:0005622_0.800|GO:0005737_0.786|GO:0008150_0.747|GO:0016020_0.741|GO:0071944_0.698|GO:0005886_0.694|GO:0043226_0.679|GO:0043229_0.657|GO:0009987_0.635|GO:0043227_0.633|GO:0003674_0.624|GO:0043231_0.608|GO:0005773_0.543|GO:0012505_0.524|GO:0051179_0.504
|
IPR005225+1-156+|IPR006689+1-158_1-160_2-25_30-54_57-82_102-123+|IPR024156+1-160+|IPR027417+1-160_1-164+
|
SM00175+1-163+|SM00177+1-164+|SM00178+1-160+
|
PF00025+1-158+ADP-ribosylation_factor_family
|
G3DSA:3.40.50.300:FF:000306+1-164+ADP-ribosylation_factor-like_protein_1
|
PTHR11711+1-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-164
|
1r4a_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.554
|
18317.120
|
5.784
|
-1.000
|
24.390
|
9.146
|
45.122
|
54.878
|
12.195
|
12.195
|
46.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
saddlebrown
|
192.689
|
68.217
|
79.948
|
76.660
|
141.272
|
101.997
|
206.167
|
110.204
|
176.084
|
416.779
|
313.624
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.849
|
-0.455
|
1.027
|
— |
1.046
|
— | — | — | — | — |
No JSON data available for plots.