Hg_chrom3_TN10mRNA_6084
Organism: Heterodera glycines Gene Locus: chr3:8747439-8750739 Feature type: polypeptideProtein Sequence
Length: 297
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 0.94 | 0.979 | 1.161 | 0.954 | 1.468 | 1.082 | 1.01 | 1.496 | 0.956 | 0.918 | 1.386 | 1.403 | 0.777 | 1.031 | 0.866 | 0.828 | 0.969 | 1.295 | 0.297 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5771
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.207
|
0.860
|
0.152
|
0.543
|
0.020
|
0.026
|
0.035
|
0.053
|
0.091
|
0.084
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008035
|
1.000
|
1.000
|
Hsc_gene_212.t1
|
Hsc_gene_212.t1
|
— |
P41994.1 Probable-ribose 5-phosphate isomerase [Caenorhabditis elegans]
|
KAI1720218.1 ribose 5-phosphate isomerase A (phosphoriboisomerase a) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004751|GO:0009052
|
GO:0008150_0.866|GO:0003674_0.740|GO:0009987_0.735|GO:0005575_0.720|GO:0110165_0.705|GO:0008152_0.652|GO:0005622_0.630|GO:0003824_0.627|GO:0044238_0.625|GO:0005737_0.602|GO:0044281_0.575|GO:0044237_0.566|GO:0016853_0.524|GO:0004751_0.520|GO:0016860_0.520|GO:0016861_0.520|GO:0006139_0.516|GO:1901135_0.509
|
IPR004788+60-293_69-289_76-285_113-288+|IPR037171+63-211+
|
— |
PF06026+113-288+Ribose_5-phosphate_isomerase_A_(phosphoriboisomerase_A)
|
G3DSA:3.40.50.1360:FF:000001+65-204+Ribose-5-phosphate_isomerase_A
|
PTHR11934+60-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-57
|
1.000
|
58-297
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
32671.370
|
7.257
|
3.000
|
24.242
|
9.764
|
45.118
|
54.882
|
13.131
|
11.111
|
51.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
turquoise
|
1431.567
|
1946.569
|
1048.484
|
1845.958
|
2790.030
|
2396.062
|
2534.869
|
1305.435
|
203.083
|
910.515
|
607.330
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.122
|
-0.214
|
0.924
|
0.564
|
-0.204
|
— |
-0.980
|
1.099
|
— | — | — | — | — |
No JSON data available for plots.