Hg_chrom3_TN10mRNA_6085
Organism: Heterodera glycines Gene Locus: chr3:8750800-8752272 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 0.711 | 0.834 | 0.0 | 0.51 | 4.156 | 0.837 | 1.07 | 0.612 | 0.661 | 0.556 | 2.159 | 0.849 | 3.058 | 0.499 | 0.655 | 0.902 | 1.066 | 0.47 | 0.989 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5772
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.863
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.464
|
0.164
|
0.003
|
0.757
|
0.183
|
0.401
|
0.157
|
0.008
|
0.116
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008036
|
1.000
|
1.000
|
Hsc_gene_213.t1
|
— | — |
Q9U1W1.1 Protein tfg-1 [Caenorhabditis elegans]
|
KAF7638664.1 PB1 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006888|GO:0042802|GO:0048208
|
GO:0008150_0.952|GO:0005575_0.946|GO:0110165_0.940|GO:0065007_0.921|GO:0050789_0.917|GO:0009987_0.916|GO:0050794_0.905|GO:0005622_0.872|GO:0016020_0.858|GO:0043226_0.818|GO:0043229_0.794|GO:0071944_0.770|GO:0051179_0.769|GO:0005737_0.755|GO:0043227_0.754|GO:0051234_0.750|GO:0005886_0.748|GO:0006810_0.738|GO:0043231_0.738|GO:0051641_0.738|GO:0051649_0.702|GO:0016192_0.700|GO:0046907_0.689|GO:0048193_0.676|GO:0006888_0.670|GO:0005773_0.600|GO:0012505_0.596|GO:0005783_0.551|GO:0070971_0.540|GO:0003674_0.532|GO:0005488_0.532|GO:0032501_0.531|GO:0032502_0.531
|
IPR000270+3-83_4-72+|IPR033512+2-86+|IPR053793+3-81+
|
SM00666+3-83+
|
PF00564+4-72+PB1_domain
|
— |
PTHR15335+2-86+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
93-327
|
1.000
|
1-92
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
36018.500
|
6.142
|
-1.500
|
15.902
|
9.174
|
45.260
|
54.740
|
8.257
|
7.645
|
54.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellowgreen
|
4278.747
|
4009.289
|
2591.830
|
4814.130
|
6319.415
|
7162.438
|
3967.903
|
3272.392
|
4289.533
|
3450.846
|
3810.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.858
|
0.127
|
1.001
|
0.360
|
0.196
|
-0.842
|
-1.232
|
0.419
|
— | — | — | — | — |
No JSON data available for plots.