Hg_chrom3_TN10mRNA_6088
Organism: Heterodera glycines Gene Locus: chr3:8757519-8758361 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.257 | 1.028 | 0.603 | 0.572 | 1.75 | 0.85 | 0.263 | 1.105 | 1.351 | 1.717 | 1.088 | 1.3 | 0.767 | 1.487 | 2.142 | 0.552 | 0.543 | 0.921 | 1.7 | 1.625 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5775
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.900
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
2-34
|
0.984
|
— | — |
0.000
|
— | — |
0.086
|
0.941
|
0.019
|
0.110
|
0.013
|
0.013
|
0.009
|
0.013
|
0.044
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008038
|
1.000
|
1.000
|
Hsc_gene_216.t1
|
Hsc_gene_216.t1
|
— |
Q9D8P4.1 Large ribosomal subunit protein bL17m [Mus musculus]
|
KAI1725459.1 ribosomal protein l17 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
— |
IPR000456+19-175_38-128+|IPR036373+34-152_38-156+
|
— |
PF01196+38-128+Ribosomal_protein_L17
|
— |
PTHR14413+19-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
21998.640
|
9.605
|
9.000
|
33.702
|
12.707
|
48.619
|
51.381
|
19.890
|
13.812
|
34.807
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
861.368
|
514.546
|
529.531
|
610.402
|
807.405
|
624.865
|
987.740
|
573.766
|
1255.371
|
1083.861
|
1157.365
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.189
|
— |
0.314
|
0.372
|
-0.355
|
0.672
|
— |
0.929
|
— | — | — | — | — |
No JSON data available for plots.