Hg_chrom3_TN10mRNA_6089
Organism: Heterodera glycines Gene Locus: chr3:8758528-8760145 Feature type: polypeptideProtein Sequence
Length: 306
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 0.608 | 0.891 | 0.676 | 1.525 | 1.592 | 0.973 | 1.307 | 1.162 | 1.634 | 0.545 | 0.577 | 0.635 | 0.691 | 1.601 | 0.98 | 0.804 | 0.99 | 0.503 | 0.577 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5776
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.766
|
0.196
|
0.019
|
0.417
|
0.262
|
0.202
|
0.108
|
0.046
|
0.054
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008039
|
1.000
|
1.000
|
Hsc_gene_217.t1
|
Hsc_gene_217.t1
|
— |
P91529.1 Probable DNA-directed RNA polymerase III subunit RPC6 [Caenorhabditis elegans]
|
KAI1711064.1 RNA polymerase rpc34 subunit domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005666|GO:0006383
|
GO:0005575_0.897|GO:0110165_0.890|GO:0005622_0.834|GO:0016020_0.789|GO:0005737_0.758|GO:0043226_0.758|GO:0043229_0.748|GO:0043227_0.724|GO:0043231_0.694|GO:0008150_0.659|GO:0005829_0.630|GO:0005634_0.622|GO:0009987_0.602|GO:0003674_0.588|GO:0065007_0.577|GO:0050789_0.563|GO:0050794_0.542|GO:0005488_0.537|GO:0050896_0.528|GO:0008152_0.511|GO:0032501_0.504
|
IPR007832+42-301+|IPR016049+41-301+|IPR036388+75-147+|IPR036390+85-153+
|
— |
PF05158+42-301+RNA_polymerase_Rpc34_subunit
|
G3DSA:1.10.10.10:FF:000116+90-154+DNA-directed_RNA_polymerase_III_subunit_RPC6
|
PTHR12780+41-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7
|
1.000
|
8-306
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
33882.360
|
5.656
|
-4.000
|
28.105
|
7.516
|
48.693
|
51.307
|
14.052
|
14.052
|
47.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
498.056
|
527.951
|
451.464
|
501.729
|
540.297
|
381.060
|
710.551
|
330.825
|
239.045
|
708.258
|
507.167
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.456
|
-0.211
|
0.261
|
— |
-0.489
|
0.911
|
— |
1.246
|
— | — | — | — | — |
No JSON data available for plots.