Hg_chrom3_TN10mRNA_6090
Organism: Heterodera glycines Gene Locus: chr3:8760312-8763443 Feature type: polypeptideProtein Sequence
Length: 668
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.323 | 1.143 | 0.516 | 1.322 | 2.034 | 0.659 | 1.198 | 0.466 | 1.76 | 0.817 | 1.409 | 1.372 | 1.036 | 1.558 | 0.684 | 0.736 | 0.476 | 0.691 | 0.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5777
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RLMKRQK,RRLLGRTFGAEQRRRGG,KRQKEMDEWALNRKRCF,KAKNEGKNKNRKGTKKQKRTKAEKAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.421
|
0.158
|
0.005
|
0.582
|
0.173
|
0.092
|
0.230
|
0.020
|
0.034
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003654
|
1.000
|
2.000
|
Hsc_gene_218.t1;Hsc_gene_218.t2
|
Hsc_gene_218.t1;Hsc_gene_218.t2
|
— | — |
KAH7728319.1 Hc38 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.930|GO:0110165_0.930|GO:0005622_0.879|GO:0016020_0.768|GO:0008150_0.751|GO:0043226_0.738|GO:0043229_0.720|GO:0043227_0.690|GO:0043231_0.648|GO:0005634_0.611|GO:0009987_0.599
|
IPR006994+13-650_217-558+
|
— |
PF04910+217-558+Transcriptional_repressor_TCF25
|
— |
PTHR22684+13-650+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-199;543-668
|
1.000
|
200-542
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
76426.320
|
6.512
|
0.000
|
29.641
|
9.431
|
52.545
|
47.455
|
15.419
|
14.222
|
44.162
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2248.635
|
2539.022
|
2049.285
|
2593.939
|
2789.907
|
2602.679
|
2239.600
|
1968.687
|
2119.242
|
1954.675
|
2025.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.538
|
-0.106
|
0.449
|
— | — |
-0.206
|
-0.508
|
0.329
|
— | — | — | — | — |
No JSON data available for plots.