Hg_chrom3_TN10mRNA_6091
Organism: Heterodera glycines Gene Locus: chr3:8763626-8765368 Feature type: polypeptideProtein Sequence
Length: 326
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.749 | 0.785 | 1.227 | 0.423 | 0.869 | 1.101 | 1.022 | 1.074 | 1.159 | 1.534 | 0.744 | 1.263 | 1.363 | 1.062 | 1.502 | 1.052 | 0.754 | 0.837 | 0.944 | 0.541 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5778
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.837
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
6-28
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.252
|
0.901
|
0.037
|
0.245
|
0.028
|
0.038
|
0.017
|
0.070
|
0.022
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008040
|
1.000
|
1.000
|
Hsc_gene_219.t1
|
Hsc_gene_219.t1
|
— |
B8JMH0.1 Putative transferase CAF17 homolog, mitochondrial [Danio rerio]
|
KAI1730668.1 tRNA-modifying protein YgfZ [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.897|GO:0110165_0.897|GO:0005622_0.816|GO:0005737_0.763|GO:0016020_0.752|GO:0043226_0.712|GO:0043229_0.678|GO:0043227_0.666|GO:0043231_0.654
|
IPR006222+17-64+|IPR017703+164-226+|IPR027266+3-269+|IPR045179+9-325+
|
— |
PF01571+17-64+Aminomethyltransferase_folate-binding_domain
|
— |
PTHR22602+9-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-326
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
36302.470
|
7.786
|
4.500
|
26.380
|
10.123
|
46.012
|
53.988
|
14.417
|
11.963
|
49.387
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1204.387
|
1354.769
|
823.002
|
730.663
|
729.957
|
678.374
|
1156.509
|
871.403
|
1174.176
|
2009.307
|
1651.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.950
|
-1.028
|
— | — | — |
0.781
|
0.258
|
0.552
|
— | — | — | — | — |
No JSON data available for plots.