Hg_chrom3_TN10mRNA_6095
Organism: Heterodera glycines Gene Locus: chr3:8787374-8788304 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.867 | 0.867 | 1.92 | 0.214 | 2.795 | 0.796 | 0.665 | 0.311 | 1.518 | 1.343 | 0.847 | 1.827 | 2.07 | 0.119 | 0.887 | 0.71 | 0.611 | 0.376 | 0.478 | 0.548 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5782
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.468
|
0.138
|
0.061
|
0.684
|
0.179
|
0.159
|
0.155
|
0.009
|
0.252
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008043
|
1.000
|
1.000
|
Hsc_gene_222.t1
|
Hsc_gene_222.t1
|
— |
Q09665.1 Troponin C, isoform 2 [Caenorhabditis elegans]
|
KAI6182346.1 Pat-10 [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.761|GO:0110165_0.755|GO:0005622_0.729|GO:0008150_0.658|GO:0005737_0.647|GO:0043226_0.613|GO:0003674_0.611|GO:0043229_0.584|GO:0005488_0.580|GO:0016020_0.576|GO:0009987_0.553
|
IPR002048+15-50_18-80_19-47_51-86_55-83_91-126_94-156_95-123_127-161_131-159+|IPR011992+9-157+|IPR018247+64-76_140-152+|IPR050230+10-154+
|
SM00054+19-47_55-83_95-123_131-159+
|
PF13499+18-80_94-156+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000001+9-159+Calmodulin_1
|
PTHR23048+10-154+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
2jnf_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
18589.520
|
3.835
|
-27.500
|
37.888
|
10.559
|
53.416
|
46.584
|
10.559
|
27.329
|
39.752
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1698.525
|
271.786
|
619.922
|
1145.364
|
550.013
|
148.004
|
136.917
|
379.403
|
2151.383
|
4598.231
|
3549.582
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
1.938
|
0.994
|
-1.090
|
-1.879
|
— |
1.253
|
-1.329
|
— | — | — | — | — |
No JSON data available for plots.