Hg_chrom3_TN10mRNA_6096
Organism: Heterodera glycines Gene Locus: chr3:8788957-8790417 Feature type: polypeptideProtein Sequence
Length: 289
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.086 | 0.644 | 0.818 | 0.597 | 0.865 | 0.71 | 0.989 | 1.038 | 0.769 | 0.655 | 1.258 | 1.832 | 2.018 | 0.799 | 1.907 | 0.544 | 0.794 | 1.311 | 1.597 | 1.018 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5783
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
20-44
|
0.973
|
4-35
|
0.994
|
— | — |
0.000
|
— | — |
0.388
|
0.261
|
0.074
|
0.260
|
0.432
|
0.189
|
0.313
|
0.019
|
0.125
|
0.654
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001977
|
1.000
|
3.000
|
Hsc_gene_18210.t1;Hsc_gene_20825.t1;Hsc_gene_223.t1
|
Hsc_gene_223.t1
|
— | — |
KAI3420161.1 Beta-1,3-galactosyltransferase 5 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.893|GO:0008152_0.723|GO:0009058_0.682|GO:0044238_0.669|GO:0003674_0.663|GO:0009987_0.641|GO:0003824_0.588|GO:0044237_0.588|GO:0044249_0.543
|
IPR002659+17-226_33-226+
|
— |
PF01762+33-226+Galactosyltransferase
|
— |
PTHR11214+17-226+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-289
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.557
|
33062.280
|
10.590
|
26.000
|
29.412
|
14.879
|
43.599
|
56.401
|
19.723
|
9.689
|
48.097
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
280.642
|
34.536
|
182.708
|
118.076
|
111.500
|
56.486
|
257.679
|
97.022
|
931.485
|
207.444
|
517.747
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.172
|
1.635
|
-0.520
|
— |
-0.968
|
2.199
|
0.680
|
1.550
|
— | — | — | — | — |
No JSON data available for plots.