SCN Proteipedia

Hg_chrom3_TN10mRNA_6098

Organism: Heterodera glycines Gene Locus: chr3:8796873-8800546 Feature type: polypeptide

Protein Sequence

Length: 695

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.121	1.071	0.942	0.843	1.295	0.812	1.182	0.719	1.599	0.933	1.112	1.777	0.679	0.83	1.263	0.576	0.802	0.916	0.775	0.719	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5785	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.667

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRQK	—	—	—	—	—	—	0.000	—	—	0.280	0.386	0.037	0.654	0.138	0.096	0.072	0.104	0.208	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008045	1.000	1.000	Hsc_gene_225.t1	—	—	Q9N4K2.2 Putative cystathionine beta-synthase cbs-2 [Caenorhabditis elegans]	KAI6181449.1 Cystathionine beta-synthase [Aphelenchoides besseyi];KAI6195417.1 Cystathionine beta-synthase [Aphelenchoides besseyi]	No	-0.060

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006535	GO:0008150_0.878\|GO:0003674_0.808\|GO:0009987_0.748\|GO:0008152_0.715\|GO:0044238_0.689\|GO:0009058_0.674\|GO:0044237_0.668\|GO:0005575_0.665\|GO:0003824_0.661\|GO:0110165_0.632\|GO:0044249_0.629\|GO:0044281_0.623\|GO:0006520_0.598\|GO:0006082_0.589\|GO:0019752_0.589\|GO:0043436_0.589\|GO:1901605_0.573\|GO:0170033_0.571\|GO:0170039_0.570\|GO:0006790_0.567\|GO:0044272_0.563\|GO:0000096_0.560\|GO:0006534_0.560\|GO:0009069_0.560\|GO:0008652_0.546\|GO:0044283_0.534\|GO:0016053_0.531\|GO:0046394_0.530\|GO:0005622_0.527\|GO:1901607_0.526\|GO:0170034_0.524\|GO:0170038_0.524\|GO:0000097_0.519\|GO:0009070_0.519\|GO:0019344_0.519	IPR001216+79-97_412-430+\|IPR001926+126-308_384-678+\|IPR036052+39-142_40-327_154-328_381-688_388-684_420-534+\|IPR050214+47-128+	—	PF00291+126-308_384-678+Pyridoxal-phosphate_dependent_enzyme	G3DSA:3.40.50.1100:FF:000003+420-534+Cystathionine_beta-synthase\|G3DSA:3.40.50.1100:FF:000118+181-323_543-688+Related_to_CYS4-cystathionine_beta-synthase	PTHR10314+47-128+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-21;691-695	1.000	22-690	5ohx_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.750	76057.200	7.912	9.000	27.914	7.338	44.604	55.396	14.964	12.950	51.079

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	2148.798	4938.005	2907.981	1743.630	2087.056	2817.738	1801.361	4605.687	987.945	821.984	893.110

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.993	-1.639	-0.630	0.227	0.449	-0.636	0.601	-1.211	—	—	—	—	—

No JSON data available for plots.

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