Hg_chrom3_TN10mRNA_6099
Organism: Heterodera glycines Gene Locus: chr3:8801751-8811310 Feature type: polypeptideProtein Sequence
Length: 2,469
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 1.488 | 0.722 | 0.419 | 2.086 | 1.018 | 0.636 | 0.932 | 1.377 | 1.308 | 1.786 | 1.596 | 1.508 | 0.351 | 1.083 | 0.613 | 0.631 | 0.638 | 1.277 | 0.465 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5786
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL,AAAED,KKKKK,KREKKKAKQKKQKKA,RRRKALDERAEVKQRKE,KRILPQLIGKNQWKKQNK,KKRWVGQIHAEEMRKLLK,RRQFAWENFGKEAKKNIR,KKEAEKAKNGEFEAKKRWV,RKIIEKSQRKYEESKRKGT,KRKEEKEVKVKREKKKAKQ,RKEEKEVKVKREKKKAKQK,RRQFDKITELFHQRRRKAL,KKRKFRETEKVKKEIKLKNGQ
|
4-24
|
0.928
|
— | — | — | — |
0.000
|
— | — |
0.515
|
0.208
|
0.013
|
0.560
|
0.111
|
0.119
|
0.085
|
0.048
|
0.105
|
0.266
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001217
|
1.000
|
4.000
|
Hsc_gene_12400.t1;Hsc_gene_12400.t2;Hsc_gene_228.t1;Hsc_gene_5595.t1
|
Hsc_gene_228.t1
|
— |
Q9WVP6.3 Poly(A) polymerase beta [Mus musculus]
|
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.747|GO:0110165_0.738|GO:0005622_0.719|GO:0043226_0.657|GO:0016020_0.646|GO:0043229_0.635|GO:0008150_0.581|GO:0043227_0.575|GO:0043231_0.550|GO:0003674_0.511
|
IPR007012+2160-2307+
|
— |
PF04928+2160-2307+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+2157-2463+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
60-108;716-812;1493-1685;2455-2469
|
4.000
|
1-59;109-715;813-1492;1686-2454
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
287730.360
|
8.378
|
38.000
|
35.439
|
10.531
|
53.949
|
46.051
|
18.955
|
16.484
|
37.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1579.178
|
246.541
|
576.564
|
358.718
|
156.144
|
68.240
|
43.971
|
326.999
|
2554.583
|
4326.523
|
3567.120
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.996
|
0.404
|
-0.576
|
-1.230
|
-1.181
|
-0.626
|
2.155
|
-2.754
|
— | — |
-4.430
|
— | — |
No JSON data available for plots.