SCN Proteipedia

Hg_chrom3_TN10mRNA_6103

Organism: Heterodera glycines Gene Locus: chr3:8832984-8834217 Feature type: polypeptide

Protein Sequence

Length: 310

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.9	0.9	0.587	1.224	0.538	1.406	0.461	1.613	0.502	1.133	1.026	0.949	1.613	2.047	1.448	1.613	1.216	0.489	0.496	0.19	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5790	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKAFKVKSYLTKHKKS	7-98	0.820	—	—	—	—	0.000	—	—	0.831	0.121	0.014	0.303	0.026	0.019	0.026	0.044	0.041	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003655	2.000	1.000	Hsc_gene_235.t1	Hsc_gene_235.t1	—	Q02026.1 Escargot/snail protein homolog [Pholcus phalangioides]	Q02026.1 Escargot/snail protein homolog [Pholcus phalangioides];AAA89212.1 zinc finger protein, partial [Pholcus phalangioides]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.960\|GO:0065007_0.960\|GO:0050789_0.956\|GO:0009987_0.951\|GO:0050794_0.951\|GO:0008152_0.931\|GO:0019222_0.931\|GO:0031323_0.931\|GO:0044237_0.931\|GO:0044238_0.922\|GO:0080090_0.922\|GO:0009058_0.919\|GO:0009059_0.919\|GO:0010467_0.919\|GO:0043170_0.919\|GO:0044249_0.919\|GO:0060255_0.912\|GO:0006139_0.909\|GO:0016070_0.909\|GO:0032774_0.909\|GO:0034654_0.909\|GO:0090304_0.909\|GO:0141187_0.909\|GO:0005575_0.908\|GO:0009889_0.905\|GO:0010468_0.905\|GO:0010556_0.905\|GO:0031326_0.905\|GO:0110165_0.904\|GO:0006351_0.897\|GO:0006355_0.897\|GO:0019219_0.897\|GO:0051252_0.897\|GO:2001141_0.897\|GO:0005622_0.892\|GO:0043226_0.892\|GO:0043229_0.892\|GO:0005634_0.858\|GO:0016020_0.858\|GO:0043227_0.858\|GO:0043231_0.858\|GO:0048519_0.851\|GO:0048523_0.842\|GO:0003674_0.810\|GO:0005488_0.808\|GO:0003676_0.800\|GO:0097159_0.800\|GO:0032501_0.790\|GO:0032502_0.786\|GO:0048856_0.786\|GO:0003677_0.770\|GO:0043565_0.770\|GO:0003690_0.760\|GO:1990837_0.760\|GO:0006357_0.759\|GO:0006366_0.759\|GO:0009892_0.715\|GO:0010605_0.715\|GO:0045934_0.715\|GO:0051253_0.715\|GO:0001067_0.713\|GO:0000976_0.710\|GO:0031324_0.709\|GO:0140110_0.704\|GO:0009890_0.703\|GO:0010558_0.703\|GO:0031327_0.703\|GO:0045892_0.703\|GO:1902679_0.703\|GO:0000122_0.696\|GO:0007275_0.675\|GO:0003700_0.673\|GO:0048731_0.642\|GO:0000977_0.617\|GO:0048513_0.606\|GO:0043228_0.604\|GO:0043232_0.604\|GO:0050896_0.604\|GO:0000785_0.576\|GO:0000981_0.576\|GO:0005694_0.576\|GO:0048518_0.570\|GO:0048522_0.564\|GO:0048869_0.559\|GO:0031974_0.557\|GO:0031981_0.557\|GO:0043233_0.557\|GO:0070013_0.557\|GO:0030154_0.556\|GO:0009893_0.538\|GO:0031325_0.536\|GO:0010604_0.535\|GO:0009891_0.530\|GO:0031328_0.530\|GO:0010557_0.525\|GO:0045935_0.518\|GO:0005654_0.517\|GO:0051254_0.516\|GO:0045893_0.502\|GO:1902680_0.502	IPR013087+223-245_223-250_224-245_225-245_251-273_251-278_253-273_279-299_279-307+\|IPR036236+224-254_245-297+	SM00355+223-245_251-273_279-299+	PF00096+224-245_251-273_279-299+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000446+276-300+Zinc_finger_protein\|G3DSA:3.30.160.60:FF:002343+232-275+Zinc_finger_protein_33A	PTHR23235+42-300+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3;126-171	2.000	4-125;172-310	3w5k_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.829	34339.270	10.688	28.000	23.548	10.323	51.613	48.387	17.097	6.452	54.839

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	red	33.482	3.541	8.944	8.864	32.795	19.999	178.272	17.938	1.382	44.063	25.771

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.106	1.190	—	1.855	-0.698	3.165	—	3.458	—	—	—	—	—

No JSON data available for plots.

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