Hg_chrom3_TN10mRNA_6105
Organism: Heterodera glycines Gene Locus: chr3:8836453-8839010 Feature type: polypeptideProtein Sequence
Length: 579
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 0.964 | 0.879 | 0.238 | 1.151 | 2.17 | 0.699 | 1.986 | 0.96 | 1.027 | 0.89 | 2.133 | 0.864 | 0.697 | 1.727 | 0.962 | 1.133 | 0.68 | 0.531 | 0.61 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5792
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKTLEAKMEELRKIRE,RRTGSAGTNILYRIRRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.491
|
0.134
|
0.058
|
0.485
|
0.051
|
0.152
|
0.062
|
0.038
|
0.372
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001978
|
3.000
|
1.000
|
Hsc_gene_15538.t1
|
Hsc_gene_15538.t1
|
— |
Q6VNB8.1 WD repeat and FYVE domain-containing protein 3 [Mus musculus]
|
KAI1710541.1 beige/BEACH domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.871|GO:0110165_0.864|GO:0005622_0.822|GO:0008150_0.727|GO:0005737_0.695|GO:0009987_0.691|GO:0003674_0.675|GO:0016020_0.589|GO:0043226_0.562|GO:0043229_0.554
|
IPR011993+41-144+|IPR023362+25-145_28-147_94-144+|IPR051944+11-170+
|
— |
PF14844+94-144+PH_domain_associated_with_Beige/BEACH
|
— |
PTHR46108+11-170+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;156-579
|
1.000
|
19-155
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.788
|
66039.490
|
10.001
|
26.500
|
30.052
|
9.845
|
56.304
|
43.696
|
18.307
|
11.744
|
44.905
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
311.909
|
87.665
|
127.638
|
191.611
|
367.513
|
219.298
|
468.252
|
114.277
|
20.852
|
757.867
|
442.004
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.308
|
0.991
|
0.698
|
0.909
|
-0.731
|
1.107
|
-1.047
|
2.180
|
-5.357
|
3.419
|
— | — | — |
No JSON data available for plots.