Hg_chrom3_TN10mRNA_6107
Organism: Heterodera glycines Gene Locus: chr3:8841956-8844156 Feature type: polypeptideProtein Sequence
Length: 186
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 1.5 | 0.684 | 1.112 | 0.717 | 0.138 | 0.576 | 2.688 | 1.075 | 1.235 | 1.303 | 0.633 | 2.389 | 0.31 | 0.987 | 0.614 | 1.322 | 1.466 | 0.414 | 0.791 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.417
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
KKRNNGSLEVPKCFKAKAK,KRNNGSLEVPKCFKAKAKK
|
— | — | — | — |
1-22
|
0.874
|
0.559
|
2.000
|
2.000
|
0.205
|
0.536
|
0.162
|
0.122
|
0.557
|
0.120
|
0.104
|
0.049
|
0.175
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_241.t1
|
— | — | — |
WP_229161212
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0008150_0.935|GO:0005575_0.899|GO:0110165_0.899|GO:0016020_0.831|GO:0005622_0.789|GO:0043226_0.773|GO:0008152_0.767|GO:0044238_0.758|GO:0005737_0.757|GO:0043229_0.749|GO:0043227_0.739|GO:0043231_0.739|GO:0043170_0.729|GO:0019538_0.722|GO:0009056_0.690|GO:0009057_0.682|GO:0030163_0.677|GO:0010304_0.670|GO:0031090_0.615|GO:0098588_0.574|GO:0043228_0.569|GO:0043232_0.568|GO:0031967_0.562|GO:0009536_0.555|GO:0009507_0.550|GO:0019867_0.546|GO:0031968_0.546|GO:0009526_0.545|GO:0009941_0.545|GO:0042170_0.545|GO:0009534_0.540|GO:0009535_0.540|GO:0009579_0.540|GO:0031976_0.540|GO:0034357_0.540|GO:0042651_0.540|GO:0055035_0.540|GO:0009987_0.529
|
IPR037219+93-168_98-150+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-186
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.558
|
21159.610
|
9.824
|
15.000
|
26.882
|
17.204
|
46.237
|
53.763
|
18.817
|
8.065
|
49.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
48.180
|
10.075
|
16.866
|
27.604
|
21.407
|
19.436
|
39.017
|
3.891
|
19.812
|
144.066
|
90.814
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.319
|
0.825
|
— | — |
1.015
|
-2.431
|
3.474
|
— | — | — | — |
7.422
|