Hg_chrom3_TN10mRNA_6112
Organism: Heterodera glycines Gene Locus: chr3:8882289-8883396 Feature type: polypeptideProtein Sequence
Length: 141
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.66 | 0.825 | 0.516 | 0.489 | 0.355 | 1.273 | 0.422 | 1.418 | 1.418 | 1.342 | 0.645 | 2.503 | 2.758 | 0.955 | 1.447 | 1.216 | 0.581 | 0.967 | 2.728 | 1.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5799
|
— | — |
1.333
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
6-28
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.048
|
0.885
|
0.110
|
0.207
|
0.165
|
0.133
|
0.215
|
0.506
|
0.043
|
0.227
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003657
|
2.000
|
1.000
|
Hsc_gene_238.t1
|
Hsc_gene_238.t1
|
— |
Q21828.2 Probable mitochondrial pyruvate carrier 1 [Caenorhabditis elegans]
|
KAI3420154.1 pyruvate transporter mpc1 [Globodera pallida]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005743|GO:0006850
|
GO:0005575_0.881|GO:0110165_0.877|GO:0008150_0.828|GO:0016020_0.817|GO:0005622_0.794|GO:0005737_0.788|GO:0009987_0.768|GO:0043226_0.768|GO:0043229_0.757|GO:0043227_0.753|GO:0043231_0.751|GO:0005739_0.578|GO:0051179_0.521|GO:0051234_0.515|GO:0006810_0.512
|
IPR005336+33-128+
|
— |
PF03650+33-128+Mitochondrial_pyruvate_carriers
|
— |
PTHR14154+48-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-141
|
9o9t_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
16755.690
|
10.440
|
11.000
|
19.149
|
20.567
|
39.716
|
60.284
|
14.184
|
4.965
|
40.426
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
228.826
|
60.918
|
94.153
|
149.339
|
322.839
|
225.536
|
200.555
|
121.905
|
34.078
|
534.840
|
320.228
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.399
|
1.156
|
0.774
|
1.079
|
-0.502
|
— |
-0.989
|
0.857
|
-4.111
|
— | — | — | — |
No JSON data available for plots.