Hg_chrom3_TN10mRNA_6121
Organism: Heterodera glycines Gene Locus: chr3:8902773-8904517 Feature type: polypeptideProtein Sequence
Length: 186
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 0.625 | 1.173 | 0.185 | 1.523 | 0.414 | 0.448 | 1.613 | 1.195 | 1.162 | 0.733 | 2.214 | 1.344 | 0.827 | 1.207 | 1.613 | 0.793 | 0.978 | 0.827 | 1.107 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5805
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
1-37
|
0.977
|
15-65
|
0.997
|
— | — |
0.000
|
— | — |
0.091
|
0.479
|
0.037
|
0.126
|
0.832
|
0.403
|
0.452
|
0.066
|
0.263
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003656
|
2.000
|
1.000
|
Hsc_gene_239.t1
|
Hsc_gene_239.t1;Hsc_gene_239.t2
|
— |
Q9V4N3.1 Cytochrome b5 [Drosophila melanogaster]
|
KAF7638660.1 Cytochrome b5 heme-binding domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0020037
|
GO:0005575_0.854|GO:0110165_0.851|GO:0016020_0.770|GO:0008150_0.763|GO:0005622_0.690|GO:0005737_0.690|GO:0071944_0.625|GO:0043226_0.623|GO:0005886_0.607|GO:0009987_0.601|GO:0043227_0.589|GO:0003674_0.588|GO:0043229_0.587|GO:0043231_0.575
|
IPR001199+58-134_61-134_62-133_83-93_93-107_108-115_121-133+|IPR018506+89-96+|IPR036400+56-140_56-145+|IPR050668+51-175+
|
SM01117+61-134+
|
PF00173+62-133+Cytochrome_b5-like_Heme/Steroid_binding_domain
|
G3DSA:3.10.120.10:FF:000002+55-138+Cytochrome_b5_type_B
|
PTHR19359+51-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-186
|
2ibj_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
21145.890
|
4.944
|
-6.000
|
29.570
|
12.903
|
50.000
|
50.000
|
13.978
|
15.591
|
47.849
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
790.575
|
173.893
|
383.588
|
707.363
|
1353.923
|
1156.925
|
811.338
|
527.953
|
589.880
|
1098.236
|
880.369
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
1.887
|
0.991
|
0.904
|
-0.212
|
-0.501
|
-1.232
|
0.761
|
— | — | — | — | — |
No JSON data available for plots.