Hg_chrom3_TN10mRNA_6134
Organism: Heterodera glycines Gene Locus: chr3:8962160-8966739 Feature type: polypeptideProtein Sequence
Length: 661
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 0.95 | 0.853 | 0.522 | 1.059 | 1.203 | 0.846 | 0.681 | 1.042 | 1.227 | 0.596 | 1.691 | 1.513 | 1.018 | 1.204 | 1.167 | 0.645 | 0.917 | 2.793 | 1.246 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5817
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRPVPK
|
9-33
|
0.826
|
62-87
|
0.976
|
— | — |
0.003
|
— | — |
0.058
|
0.116
|
0.026
|
0.247
|
0.482
|
0.418
|
0.279
|
0.013
|
0.289
|
0.600
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008053
|
1.000
|
1.000
|
Hsc_gene_249.t1
|
Hsc_gene_249.t1
|
— |
Q27459.1 Acetylcholinesterase 1 [Caenorhabditis briggsae]
|
KAI3420142.1 copper-binding transcription factor [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0004104
|
GO:0008150_0.822|GO:0003674_0.812|GO:0005575_0.765|GO:0110165_0.750|GO:0009987_0.715|GO:0065007_0.621|GO:0003824_0.575|GO:0016020_0.567|GO:0016787_0.517|GO:0008152_0.515
|
IPR000997+106-120_152-181_373-381_449-457_487-494_495-507+|IPR002018+47-590+|IPR019819+126-136+|IPR019826+222-237+|IPR029058+36-604_38-596+|IPR050654+38-600+
|
— |
PF00135+47-590+Carboxylesterase_family
|
G3DSA:3.40.50.1820:FF:000029+37-601+Acetylcholinesterase
|
PTHR43918+38-600+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
649-661
|
1.000
|
1-648
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.700
|
75523.940
|
5.919
|
-3.500
|
22.239
|
14.675
|
43.116
|
56.884
|
11.195
|
11.044
|
47.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
258.305
|
918.457
|
254.815
|
310.503
|
293.198
|
374.760
|
203.927
|
307.147
|
1.719
|
130.241
|
75.160
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.079
|
-1.702
|
0.394
|
— |
0.369
|
-0.868
|
-0.394
|
-0.448
|
-6.247
|
7.681
|
— | — | — |
No JSON data available for plots.