Hg_chrom3_TN10mRNA_6135
Organism: Heterodera glycines Gene Locus: chr3:8968377-8969415 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 1.069 | 0.522 | 0.396 | 0.958 | 2.358 | 0.753 | 1.437 | 1.405 | 1.01 | 1.045 | 1.352 | 1.916 | 0.553 | 1.29 | 0.739 | 1.036 | 0.958 | 0.0 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5818
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
AKGQKGKKRRKGQKE
|
81-110
|
0.955
|
— | — | — | — |
0.000
|
— | — |
0.180
|
0.113
|
0.029
|
0.285
|
0.228
|
0.467
|
0.297
|
0.008
|
0.675
|
0.145
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001218
|
2.000
|
3.000
|
Hsc_gene_250.t1;Hsc_gene_250.t2;Hsc_gene_250.t3
|
Hsc_gene_250.t1;Hsc_gene_250.t2;Hsc_gene_250.t3
|
— | — |
KAH7730642.1 Protein H12D21.9 [Aphelenchus avenae]
|
WXK95224
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
116-174
|
1.000
|
1-115
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
19841.760
|
10.172
|
10.500
|
24.713
|
12.644
|
50.000
|
50.000
|
16.092
|
8.621
|
43.103
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
52.833
|
105.963
|
122.755
|
42.221
|
42.840
|
76.370
|
99.197
|
111.374
|
1.205
|
4.969
|
3.356
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.465
|
-1.431
|
— |
0.851
|
0.387
|
0.438
|
— | — |
5.275
|
— | — | — |
No JSON data available for plots.