Hg_chrom3_TN10mRNA_6139
Organism: Heterodera glycines Gene Locus: chr3:8987865-8990710 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.39 | 1.235 | 0.469 | 1.359 | 1.185 | 0.712 | 2.989 | 0.543 | 0.845 | 1.07 | 1.758 | 0.83 | 0.575 | 2.717 | 0.893 | 0.445 | 0.659 | 0.0 | 0.719 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5822
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.948
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRRVRNS,RRIHDDMMRRIERHKER,RRQRRSRSKSHERKANRKR,RRSRSKSHERKANRKRSRS,KRSRSNNSRAEGGGHRRMK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.939
|
0.095
|
0.003
|
0.221
|
0.032
|
0.025
|
0.077
|
0.005
|
0.039
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008055
|
1.000
|
1.000
|
Hsc_gene_254.t1
|
Hsc_gene_254.t1
|
— |
Q3SX41.1 Luc7-like protein 3 [Bos taurus]
|
KAI1717302.1 LUC7 N-terminus domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003729|GO:0005685|GO:0006376
|
GO:0005575_0.680|GO:0110165_0.680|GO:0005622_0.661|GO:0003674_0.632|GO:0005488_0.632|GO:0043226_0.616|GO:0043229_0.603|GO:0016020_0.588|GO:0008150_0.586|GO:0005634_0.580|GO:0043227_0.580|GO:0043231_0.580
|
IPR004882+5-252_5-342+
|
— |
PF03194+5-252+LUC7_N_terminus
|
— |
PTHR12375+5-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
216-368
|
1.000
|
1-215
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
42969.980
|
10.416
|
31.000
|
41.304
|
11.413
|
60.870
|
39.130
|
26.359
|
14.946
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1260.907
|
1523.654
|
1852.112
|
1439.594
|
1338.971
|
1198.649
|
1416.459
|
1162.418
|
1347.662
|
781.277
|
1024.013
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.219
|
-0.255
|
-0.137
|
— |
0.251
|
— |
0.427
|
— | — | — | — | — |
No JSON data available for plots.