Hg_chrom3_TN10mRNA_6140
Organism: Heterodera glycines Gene Locus: chr3:8992485-8994741 Feature type: polypeptideProtein Sequence
Length: 271
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.515 | 0.601 | 1.409 | 0.636 | 0.984 | 1.419 | 1.23 | 1.476 | 0.738 | 0.798 | 1.398 | 2.171 | 1.435 | 0.71 | 1.657 | 0.685 | 0.665 | 0.839 | 0.852 | 1.194 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5823
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.077
|
0.980
|
0.011
|
0.095
|
0.029
|
0.017
|
0.033
|
0.015
|
0.066
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008056
|
1.000
|
1.000
|
Hsc_gene_255.t1
|
Hsc_gene_255.t1
|
— |
Q2KI49.1 Large ribosomal subunit protein mL50 [Bos taurus]
|
KAH7723119.1 Protein MRPL-50 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005739
|
GO:0005575_0.869|GO:0110165_0.869|GO:0005622_0.852|GO:0043226_0.802|GO:0043229_0.795|GO:0016020_0.773|GO:0005737_0.772|GO:0043227_0.769|GO:0043231_0.749|GO:0005739_0.581|GO:0031090_0.567|GO:0031967_0.560|GO:0005740_0.553|GO:0031966_0.553|GO:0005743_0.552|GO:0019866_0.552
|
IPR018305+65-216_92-182+
|
— |
PF10501+92-182+Ribosomal_subunit_39S
|
— |
PTHR31542+65-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-271
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
31182.400
|
9.626
|
14.000
|
33.948
|
13.284
|
50.923
|
49.077
|
20.295
|
13.653
|
45.018
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1310.797
|
2033.996
|
1192.888
|
1032.157
|
1099.562
|
759.448
|
871.718
|
914.276
|
940.032
|
2065.698
|
1583.269
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.000
|
-1.116
|
— | — |
-0.519
|
0.209
|
— | — | — | — | — | — | — |
No JSON data available for plots.