SCN Proteipedia

Hg_chrom3_TN10mRNA_6141

Organism: Heterodera glycines Gene Locus: chr3:8994912-8996988 Feature type: polypeptide

Protein Sequence

Length: 386

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.934	1.145	1.036	0.983	1.252	1.129	0.709	1.684	1.094	1.015	0.628	0.914	1.223	1.196	1.692	1.443	0.595	0.628	0.199	0.61	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5824	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRRR	—	—	—	—	—	—	0.000	—	—	0.417	0.374	0.031	0.517	0.133	0.141	0.184	0.011	0.449	0.175

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0008057	1.000	1.000	Hsc_gene_256.t1	Hsc_gene_256.t1	—	H2KZB2.1 Ankyrin repeat and LEM domain-containing protein 2 homolog [Caenorhabditis elegans]	KAI1713971.1 ankyrin repeat and LEM domain-containing protein 2 like protein [Ditylenchus destructor]	No	-0.070

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.939\|GO:0005575_0.902\|GO:0110165_0.890\|GO:0009987_0.871\|GO:0005622_0.846\|GO:0016020_0.792\|GO:0043226_0.781\|GO:0043229_0.772\|GO:0071840_0.754\|GO:0016043_0.744\|GO:0043227_0.734\|GO:0005737_0.731\|GO:0043231_0.723\|GO:0006996_0.697\|GO:0044085_0.691\|GO:0022607_0.686\|GO:0007049_0.682\|GO:0022402_0.682\|GO:0061024_0.682\|GO:0065007_0.675\|GO:0003674_0.671\|GO:0006997_0.670\|GO:0006998_0.670\|GO:0010256_0.670\|GO:0031468_0.670\|GO:0044091_0.670\|GO:0071709_0.670\|GO:0071763_0.670\|GO:0050789_0.667\|GO:0071944_0.652\|GO:0050794_0.649\|GO:0005886_0.636\|GO:0005488_0.635\|GO:0008152_0.611\|GO:0044237_0.595\|GO:0019222_0.582\|GO:0031323_0.578\|GO:0005515_0.576\|GO:0005773_0.571\|GO:0012505_0.570\|GO:0048519_0.564\|GO:0048523_0.551\|GO:0009892_0.520\|GO:0032501_0.519\|GO:0032502_0.518\|GO:0048856_0.518\|GO:0005634_0.517\|GO:0031324_0.514\|GO:0006793_0.502\|GO:0006796_0.502\|GO:0019899_0.502	IPR036770+178-333_191-327+\|IPR051108+160-328+	—	—	—	PTHR12349+160-328+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-73;362-386	1.000	74-361	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.798	43063.170	6.941	3.500	29.016	10.104	52.073	47.927	15.803	13.212	51.554

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	626.800	1346.643	925.130	635.713	693.664	573.793	1166.166	822.435	388.916	139.236	246.242

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.771	-1.220	-0.432	—	-0.260	1.033	0.415	0.645	—	—	—	—	—

No JSON data available for plots.

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